Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,187,280 – 11,187,375 |
Length | 95 |
Max. P | 0.679594 |
Location | 11,187,280 – 11,187,375 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 80.80 |
Mean single sequence MFE | -17.02 |
Consensus MFE | -12.59 |
Energy contribution | -12.62 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.40 |
Structure conservation index | 0.74 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11187280 95 + 20766785 UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA-AGUUUGCCAAAGUAAAACCACUAUUAAAGAUAGACUA-UACUAUAUGUACAUAUGUAUGC .(((..............(((((.(((((((.....-..))))))).....))))).((.....))...)))((-(((.((((....))))))))). ( -18.00) >DroSec_CAF1 101866 93 + 1 UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA-AGUUUGCCAAAGUAAAACCACUAU-AAAGAUAGACUA-UACUAUAUGUGUAUAUAC-UAU .(((..............(((((.(((((((.....-..))))))).....))))).((..-..))...)))((-(((.....))))).....-... ( -17.40) >DroSim_CAF1 100903 93 + 1 UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA-AGUUUGCCAAAGUAAAACCACUAU-AAAGAUAGACUA-UACUAUAUGUGUAUAUAC-UAU .(((..............(((((.(((((((.....-..))))))).....))))).((..-..))...)))((-(((.....))))).....-... ( -17.40) >DroEre_CAF1 104241 78 + 1 UGUCAAACAAAACGAAUCGGUUUGUGGCAGAGUUAA-AGCUUGCCAAAGUAAAACCACUAU-AACGAUAGACU-UUACU----------------AU ..................(((((.(((((.(((...-.)))))))).....))))).((((-....))))...-.....----------------.. ( -14.80) >DroYak_CAF1 101876 79 + 1 UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA-AGUUUGCCAAAGUAAAACCACUAU-AAAGAUAGACUAUUACU----------------AU .(((..............(((((.(((((((.....-..))))))).....))))).((..-..))...))).......----------------.. ( -14.90) >DroAna_CAF1 109001 85 + 1 UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAAAAGUUUGCCAAAGCCAAACUACUAU-AUGCA----C-----CUAAAAGUACAUAUAC--GU ...........(((....(((((.(((((((.(....).)))))))))))).......(((-(((.(----(-----......)).)))))))--)) ( -19.60) >consensus UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA_AGUUUGCCAAAGUAAAACCACUAU_AAAGAUAGACUA_UACUAUAUGU__AUAUAC__AU ..................(((((.(((((((........))))))).....)))))......................................... (-12.59 = -12.62 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:38 2006