Locus 3272

Sequence ID 2R_DroMel_CAF1
Location 11,182,216 – 11,182,309
Length 93
Max. P 0.919312
window5367

overview

Window 7

Location 11,182,216 – 11,182,309
Length 93
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -38.08
Consensus MFE -22.90
Energy contribution -23.34
Covariance contribution 0.44
Combinations/Pair 1.23
Mean z-score -2.31
Structure conservation index 0.60
SVM decision value 1.13
SVM RNA-class probability 0.919312
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11182216 93 - 20766785
UAUGGAACGCUUACUCUCUCAAA--AGAGAGA------------------GUCCUUGCCACGAGUUUUAUGAGGCCUGCUGCGUGGACCCUUAUCAAUGGGCAUCGGAUUACG
.............(((((((...--.))))))------------------)(((...((((((((............))).))))).(((........)))....)))..... ( -25.90)
>DroSec_CAF1 96792 105 - 1
UAUGGAACGCUCACUCUCUCGAA--AGAGAGGG------GAACGUUCUUGGUCCUUGCCCCGAGUUUUAUGAGGCCUGUUGCGCGGACCCUUAUCAAUGGGCAUCGGAUUACC
...((((((.((.(((((((...--.)))))))------)).))))))((((((.(((((.....((.((((((.(((.....)))..)))))).)).)))))..)))))).. ( -43.10)
>DroSim_CAF1 95810 105 - 1
AAUAGAACGCUCACUCUCUCGAA--AGAGAGGG------GAACGUUCUUGGUCCUUGCCCCGAGUUUUAUGAGGCCUGUUGCGCGGACCCUUAUCAAUGGGCAUCGGAUUACC
...((((((.((.(((((((...--.)))))))------)).))))))((((((.(((((.....((.((((((.(((.....)))..)))))).)).)))))..)))))).. ( -43.10)
>DroEre_CAF1 99218 109 - 1
UAUGGAACGCUCGCUCUUGAA----AGAGAGUGAGUUCCAAGAGUUCUUGGUCCUUGCCCCGAGUUUUAUGAGGCCUGUUGCGUGGACCCUUAUCAAUGGGCAUCGAGUUACC
...(((((((((((((((...----.)))))))))).(((((....)))))((..(((((.....((.((((((((........))..)))))).)).)))))..))))).)) ( -38.20)
>DroYak_CAF1 96812 113 - 1
UAUGGAACGCUCUCUUUUUUAAGAGAGAGAGAGAGAGUGAGGCGUUCGUGGUCCUUGCCCCGAGUUUUAUGACGCCUGUUGCGUGGACCCUUAUCAAUGGGCAUCGAAUUACU
((((.(((((((((((((((......)))))))))))).((((((.(((((..((((...))))..)))))))))))))).))))(.(((........))))........... ( -40.10)
>consensus
UAUGGAACGCUCACUCUCUCAAA__AGAGAGAG______AAACGUUCUUGGUCCUUGCCCCGAGUUUUAUGAGGCCUGUUGCGUGGACCCUUAUCAAUGGGCAUCGGAUUACC
........((((((((((((......)))))))................(((((.(((..((.((((....)))).))..))).)))))........)))))........... (-22.90 = -23.34 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:35 2006