| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,140,123 – 2,140,221 |
| Length | 98 |
| Max. P | 0.543021 |
| Location | 2,140,123 – 2,140,221 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 91.49 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -16.12 |
| Energy contribution | -16.38 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2140123 98 + 20766785 GUUUCAGCUGGAGAGCAAUAAAACUCGCUCCGCUCACAUUCCAAAUCGCCUCUCCCCGCAAAUCGGCGGGUUUUAUUACUCGCUCUCUCUCUCUCUCG .....((..((((((((((((((((((((..(....)..........((........)).....)))))))))))))....)))))))..))...... ( -24.00) >DroSec_CAF1 118793 90 + 1 GUUUCAGCUGGAGAGCAAUAAAACUCGCUCCGCUCACAUUCCAAAUCGCCUCUCCCUGCAAAUCGGCGGGUUUUAUUACUCGCUC--------UCUCG .........((((((((((((((((((((..((........................)).....)))))))))))))....))))--------))).. ( -23.46) >DroSim_CAF1 122687 90 + 1 GUUUCAGCUGGAGAGCAAUAAAACUCGCUCCGCUCACAUUCCAAAUCGCCUCUCCCCGCAAAUCGGCGGGUUUUAUUACUCGCUC--------UCUCG .........((((((((((((((((((((..(....)..........((........)).....)))))))))))))....))))--------))).. ( -23.40) >DroYak_CAF1 118578 89 + 1 -CUUUUGCUGGAGAGCAAUAAAACUGGCUCCGCUCACAUUCCAAAUCGCCUCUCCUCCCAAAUCGGCGGGUUUUAUUACUCGCUC--------UCUCG -........(((((((((((((((((((...)))............((((..............)))))))))))))....))))--------))).. ( -21.14) >consensus GUUUCAGCUGGAGAGCAAUAAAACUCGCUCCGCUCACAUUCCAAAUCGCCUCUCCCCGCAAAUCGGCGGGUUUUAUUACUCGCUC________UCUCG .........((.(((.(((((((((((((...................................))))))))))))).))).)).............. (-16.12 = -16.38 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:39 2006