Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,173,631 – 11,173,731 |
Length | 100 |
Max. P | 0.816660 |
Location | 11,173,631 – 11,173,731 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 84.20 |
Mean single sequence MFE | -35.17 |
Consensus MFE | -28.04 |
Energy contribution | -28.32 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -2.28 |
Structure conservation index | 0.80 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816660 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11173631 100 - 20766785 CUUUAUUUAUUUUCAAUUAGGUGCCACCGUGCUAGGCGCCCACUAUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCACCACCGCCGCCGCACACG ...................((.....))((((..((((.......((((((..((.(((((.....))))).))..))))))....))))...))))... ( -36.50) >DroSec_CAF1 88179 100 - 1 CUUUAUUUAUUUUCAAUUAGGUGCCACAGUUCUAGGCGCCCACUUUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCACCACCGCCGCCGCACACG ...................((((((.........)))))).....((((((..((.(((((.....))))).))..)))))).....((....))..... ( -33.10) >DroSim_CAF1 88157 100 - 1 CUUUAUUUAUUUUCAAUUAGGUGCCACCGUGCUAGGCGCCCACUUUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCUCCACCGCCGCCGCACACG ...................((.....))((((..((((........(((((..((.(((((.....))))).))..))))).....))))...))))... ( -35.62) >DroEre_CAF1 90743 100 - 1 GUUUAUUUGUUUUCCACUAGGUGCCACAGUACUGGGCGCCCAUUUCGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCCCCACCGCCGCCACACACG ...................((((((.((....)))))))).....(((((((.....((((.....))))(((....)))....)))))))......... ( -34.40) >DroYak_CAF1 88186 100 - 1 AUCUAUUUGUUUUUAAAUAGGUGCCACCGUGCUGGGCGCCCACUUUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCUCCGCCGCCGCCACACACA (((((((((....)))))))))......(((.((((((........(((((..((.(((((.....))))).))..)))))........)))).))))). ( -39.09) >DroAna_CAF1 96542 100 - 1 AUUUAUUUUUCUUUCAACAGGUGCCACUCUACUGGGCGCCCACUUUGGGGCCCCGUACGCAGCCUUUGGUGGAGCUCCCCCACCUCCACCUCCGCACACU ....................((((.....(((.((((.(((.....))))))).)))..........(((((((.........)))))))...))))... ( -32.30) >consensus CUUUAUUUAUUUUCAAUUAGGUGCCACCGUGCUAGGCGCCCACUUUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCACCACCGCCGCCGCACACG ...................((((((.........))))))......(((((..((.(((((.....))))).))..)))))................... (-28.04 = -28.32 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:30 2006