| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,171,922 – 11,172,039 |
| Length | 117 |
| Max. P | 0.982806 |
| Location | 11,171,922 – 11,172,019 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -38.12 |
| Consensus MFE | -35.12 |
| Energy contribution | -35.12 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.982806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11171922 97 + 20766785 -------------------ACCAUGGUA-AUGGUACGGUGCGACCGGAUGAUGGUUCACAACGACCGUGU---CAUUUAAACGGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUG -------------------(((((....-)))))..(((((((.(((((((.(((((.((.(((((.(((---.......)))))))).))))))).))))))).))))...)))..... ( -38.10) >DroVir_CAF1 137006 92 + 1 --------------------------UU-AUGGUACGGUGCGACCGGAUGAUGGUUCACAACGACCGUGCAU-ACUUUUAACUGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUG --------------------------..-(((((....(((((.(((((((.(((((.((.(((((((....-.......)).))))).))))))).))))))).)))))..)))))... ( -35.70) >DroGri_CAF1 137694 93 + 1 --------------------------CUGAUGGUACGGUGCGACCGGAUGACGGUUCACAACGACCGUGCUU-AUUUUUAACUGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUG --------------------------..((((((....(((((.(((((((.(((((.((.((((((.(.((-(....)))))))))).))))))).))))))).)))))..)))))).. ( -37.20) >DroWil_CAF1 129231 116 + 1 AAAUAAGGGGAGAUCCCCCAUAAUGGUA-AUGGUACGGUGCGACCGGAUGACGGUUCACAACGACCGUGU---CAAUUUUACUGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUG ......((((.....))))........(-(((((....(((((.(((((((.(((((.((.((((((((.---......))).))))).))))))).))))))).)))))..)))))).. ( -45.70) >DroMoj_CAF1 144537 93 + 1 --------------------------UU-AUGGUACGGUGCGACCGGAUGAUGGUUCACAACGACCGUACAGUUUUUUCAACGGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUG --------------------------..-(((((....(((((.(((((((.(((((.((.(((((.....(((.....))).))))).))))))).))))))).)))))..)))))... ( -34.80) >DroAna_CAF1 94925 96 + 1 --------------------UAACGGUA-AUGGUACGGUGCGACCGGAUGAUGGUUCACAACGACCGUGU---CCUUCGAACGGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUG --------------------.......(-(((((....(((((.(((((((.(((((.((.(((((.(((---.......)))))))).))))))).))))))).)))))..)))))).. ( -37.20) >consensus __________________________UA_AUGGUACGGUGCGACCGGAUGAUGGUUCACAACGACCGUGC___CAUUUUAACGGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUG .............................(((((....(((((.(((((((.(((((.((.(((((((............)).))))).))))))).))))))).)))))..)))))... (-35.12 = -35.12 + 0.00)
| Location | 11,171,922 – 11,172,019 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -29.37 |
| Consensus MFE | -24.54 |
| Energy contribution | -24.32 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11171922 97 - 20766785 CAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCCGUUUAAAUG---ACACGGUCGUUGUGAACCAUCAUCCGGUCGCACCGUACCAU-UACCAUGGU------------------- ...((((..((((((..((((....))))...(((((.(((.....)---))..))))))))))).))))....(((.....))).(((((-....)))))------------------- ( -29.50) >DroVir_CAF1 137006 92 - 1 CAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCAGUUAAAAGU-AUGCACGGUCGUUGUGAACCAUCAUCCGGUCGCACCGUACCAU-AA-------------------------- ...((((..((((((..((((....))))...(((((.((.......-..))..))))))))))).))))....(((.....)))......-..-------------------------- ( -24.80) >DroGri_CAF1 137694 93 - 1 CAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCAGUUAAAAAU-AAGCACGGUCGUUGUGAACCGUCAUCCGGUCGCACCGUACCAUCAG-------------------------- ...((((((((((((..((((....))))...(((((.(((......-.)))..)))))))))))..)))))).(((.....))).........-------------------------- ( -27.80) >DroWil_CAF1 129231 116 - 1 CAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCAGUAAAAUUG---ACACGGUCGUUGUGAACCGUCAUCCGGUCGCACCGUACCAU-UACCAUUAUGGGGGAUCUCCCCUUAUUU ..(((((.((((.....((((....)))).((......)).....))---))..(((((.(((((.(((.....)))))))).)).)))..-..)))))..(((((....)))))..... ( -36.80) >DroMoj_CAF1 144537 93 - 1 CAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCCGUUGAAAAAACUGUACGGUCGUUGUGAACCAUCAUCCGGUCGCACCGUACCAU-AA-------------------------- ..(((((.(((......((((....))))....)))))))).........(((((((....((((.((.......)))))))))))))...-..-------------------------- ( -27.70) >DroAna_CAF1 94925 96 - 1 CAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCCGUUCGAAGG---ACACGGUCGUUGUGAACCAUCAUCCGGUCGCACCGUACCAU-UACCGUUA-------------------- ..(((((..((((((..((((....))))...(((((.((((....)---).))))))))))))).........(((.....)))..))))-).......-------------------- ( -29.60) >consensus CAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCAGUUAAAAAG___ACACGGUCGUUGUGAACCAUCAUCCGGUCGCACCGUACCAU_AA__________________________ ...((((..((((((..((((....))))...(((((.((............))))))))))))).))))....(((.....)))................................... (-24.54 = -24.32 + -0.22)
| Location | 11,171,942 – 11,172,039 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -32.08 |
| Consensus MFE | -27.67 |
| Energy contribution | -27.45 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802167 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11171942 97 + 20766785 CGACCGGAUGAUGGUUCACAACGACCGUGU---CAUUUAAACGGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUGUCAACGAUUUAUC---A----------------GUGUCC- (((.(((((((.(((((.((.(((((.(((---.......)))))))).))))))).))))))).)))..((((.((..(((...)))..)).---.----------------))))..- ( -29.00) >DroPse_CAF1 86108 113 + 1 CGACCGGACGAUGGUUCACAACGACCGUGU---CUCUUAAACUGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUGUCAGCGAUUUAUC---AUCAUCGUCGCGCCCCAGUGCUC- .((((((((((.(((((.((.((((((.((---.......)))))))).))))))).))))))).......(((.........))).......---......)))((((....))))..- ( -37.70) >DroGri_CAF1 137708 98 + 1 CGACCGGAUGACGGUUCACAACGACCGUGCUU-AUUUUUAACUGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUGUCAGCGAUUUAUC---A----------------A-AUCA- (((.(((((((.(((((.((.((((((.(.((-(....)))))))))).))))))).))))))).)))...(((.........))).......---.----------------.-....- ( -29.50) >DroWil_CAF1 129270 98 + 1 CGACCGGAUGACGGUUCACAACGACCGUGU---CAAUUUUACUGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUGUCAACGAUUUAUC---A----------------UAAUCUC (((.(((((((.(((((.((.((((((((.---......))).))))).))))))).))))))).))).................((((....---.----------------.)))).. ( -30.00) >DroMoj_CAF1 144550 102 + 1 CGACCGGAUGAUGGUUCACAACGACCGUACAGUUUUUUCAACGGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUGUCAACGAUUUAUCAGCA----------------A-AUCA- (((.(((((((.(((((.((.(((((.....(((.....))).))))).))))))).))))))).))).................(((((......)----------------)-))).- ( -28.60) >DroPer_CAF1 85824 113 + 1 CGACCGGACGAUGGUUCACAACGACCGUGU---CUCUUAAACUGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUGUCAGCGAUUUAUC---AUCAUCGUCGCGCCCCAGUGCUC- .((((((((((.(((((.((.((((((.((---.......)))))))).))))))).))))))).......(((.........))).......---......)))((((....))))..- ( -37.70) >consensus CGACCGGAUGAUGGUUCACAACGACCGUGU___CUUUUAAACUGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUGUCAACGAUUUAUC___A________________GUAUCC_ (((.(((((((.(((((.((.(((((((............)).))))).))))))).))))))).))).................................................... (-27.67 = -27.45 + -0.22)
| Location | 11,171,942 – 11,172,039 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -32.07 |
| Consensus MFE | -24.14 |
| Energy contribution | -23.92 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11171942 97 - 20766785 -GGACAC----------------U---GAUAAAUCGUUGACAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCCGUUUAAAUG---ACACGGUCGUUGUGAACCAUCAUCCGGUCG -(((((.----------------(---((....))).))....((((..((((((..((((....))))...(((((.(((.....)---))..))))))))))).))))..)))..... ( -27.30) >DroPse_CAF1 86108 113 - 1 -GAGCACUGGGGCGCGACGAUGAU---GAUAAAUCGCUGACAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCAGUUUAAGAG---ACACGGUCGUUGUGAACCAUCGUCCGGUCG -........((.((.(((((((..---.......((((.......))))((((((..((((....))))...(((((.(((.....)---))..)))))))))))..))))))))).)). ( -38.90) >DroGri_CAF1 137708 98 - 1 -UGAU-U----------------U---GAUAAAUCGCUGACAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCAGUUAAAAAU-AAGCACGGUCGUUGUGAACCGUCAUCCGGUCG -.(((-(----------------.---....))))...(((..((((((((((((..((((....))))...(((((.(((......-.)))..)))))))))))..))))))...))). ( -30.20) >DroWil_CAF1 129270 98 - 1 GAGAUUA----------------U---GAUAAAUCGUUGACAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCAGUAAAAUUG---ACACGGUCGUUGUGAACCGUCAUCCGGUCG ..((((.----------------.---....))))...(((..((((((((((((..((((....))))...(((((.((.......---..)))))))))))))..))))))...))). ( -30.00) >DroMoj_CAF1 144550 102 - 1 -UGAU-U----------------UGCUGAUAAAUCGUUGACAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCCGUUGAAAAAACUGUACGGUCGUUGUGAACCAUCAUCCGGUCG -.(((-(----------------((....))))))...(((..((((..((((((..((((....))))...(((((.((............))))))))))))).))))......))). ( -27.10) >DroPer_CAF1 85824 113 - 1 -GAGCACUGGGGCGCGACGAUGAU---GAUAAAUCGCUGACAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCAGUUUAAGAG---ACACGGUCGUUGUGAACCAUCGUCCGGUCG -........((.((.(((((((..---.......((((.......))))((((((..((((....))))...(((((.(((.....)---))..)))))))))))..))))))))).)). ( -38.90) >consensus _GGACAC________________U___GAUAAAUCGCUGACAAAUGGCGUUACAAACGGACGAAAGUCCCACCGACCAGUUUAAAAG___ACACGGUCGUUGUGAACCAUCAUCCGGUCG ......................................(((..((((..((((((..((((....))))...(((((.((............))))))))))))).))))......))). (-24.14 = -23.92 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:28 2006