Locus 3264

Sequence ID 2R_DroMel_CAF1
Location 11,157,897 – 11,158,015
Length 118
Max. P 0.617543
window5352

overview

Window 2

Location 11,157,897 – 11,158,015
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 91.45
Mean single sequence MFE -26.97
Consensus MFE -23.29
Energy contribution -22.63
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -1.89
Structure conservation index 0.86
SVM decision value 0.17
SVM RNA-class probability 0.617543
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11157897 118 + 20766785
AACGUAACUUGAUUCAGAGCUUGAAUUUUGAAAAGUUAUUUGAAAGAAAUGCAUUUUGCAACAAUUCAAUUGUGUAAUAAUAAUGCGACAUAGCAAAGUUCGAGCUGCACUAGUUCGG
..((.((((........(((((((((((((....(((.(((....)))..((((((((((.((((...)))))))))....))))))))....))))))))))))).....)))))). ( -28.12)
>DroSec_CAF1 72671 115 + 1
AACGUAACAUGAUUCAGAGCUUGAAUUUUGAAAAGUUAUUUGAAAGAAAUGCAUUUUAAAACAUUUCAAUUGUUUAA---UAAUGCGACAUAGCAAGGUUUGAGCUGCACAAGUUCGG
..((.(((.((......((((..(((((((....(((.(((....)))..(((((...(((((.......)))))..---.))))))))....)))))))..))))...)).))))). ( -25.20)
>DroSim_CAF1 72267 115 + 1
AACGUAACAUGAUUCAGAGCUUGAAUUUUGAAAAGUUAUUUGUACGAAAUGCAUUUUGCAACAAUUCAAUUGUGUAA---UAAUGCGACACAGCAGAGUUCGAGCUGCACAAGUUCGG
..((.(((.((......(((((((((((((....(((.(((....)))..((((((((((.((((...)))))))))---.))))))))....)))))))))))))...)).))))). ( -27.60)
>consensus
AACGUAACAUGAUUCAGAGCUUGAAUUUUGAAAAGUUAUUUGAAAGAAAUGCAUUUUGCAACAAUUCAAUUGUGUAA___UAAUGCGACAUAGCAAAGUUCGAGCUGCACAAGUUCGG
..((.(((.((......(((((((((((((....(((((((.....))))((((((((((.(((.....))))))))....))))))))....)))))))))))))...)).))))). (-23.29 = -22.63 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:20 2006