Locus 3263

Sequence ID 2R_DroMel_CAF1
Location 11,157,152 – 11,157,244
Length 92
Max. P 0.577124
window5351

overview

Window 1

Location 11,157,152 – 11,157,244
Length 92
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -28.16
Consensus MFE -14.05
Energy contribution -14.58
Covariance contribution 0.53
Combinations/Pair 1.23
Mean z-score -1.97
Structure conservation index 0.50
SVM decision value 0.09
SVM RNA-class probability 0.577124
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11157152 92 - 20766785
CGCUCCUGUGGCAACCGC-----ACGUUGCAAGUGUUUGCUGGCUGCACUCGAGUGAGCAAAUACUUUAUUAACACAGUUUUUUGGCCAACGAGCAU
.((((((((((((((...-----..)))))(((((((((((.(((.......))).)))))))))))......)))))......(.....))))).. ( -33.80)
>DroPse_CAF1 70883 89 - 1
-----CAUCUGCCUCCGCCCCCUGCGUCGAGUGUGUUUGCUGGUUGCACUCGAGCGAGCAAAUACUUUAUUAACACAGUUUUUGGGGCAACGU---U
-----...........((((((((.((..(..(((((((((.(((.......))).)))))))))....)..)).))).....))))).....---. ( -29.60)
>DroSec_CAF1 71878 92 - 1
CGCUCCUGUGGCAACCGC-----ACGUUGCAAGUGUUUGCUGGCUGCACUCGAGUGAACAAAUACUUUAUUAACACAGUUUUUUGGCCAACGAGCAU
.((((((((((((((...-----..)))))(((((((((.(.(((.......))).).)))))))))......)))))......(.....))))).. ( -27.20)
>DroSim_CAF1 71482 92 - 1
CGCUUCUGUGGCAACCGC-----ACGUUGCAAGUGUUUGCUGGCUGCACUCGAGUGAGCAAAUACUUUAUUAACACAGUUUUUUGGCCAACGAGCAU
.((((((((((((((...-----..)))))(((((((((((.(((.......))).)))))))))))......)))))......(.....))))).. ( -31.30)
>DroAna_CAF1 70725 89 - 1
CGUU---CUGACAACCAC-----ACUUUCCGAGUGUUUGCUGGUUGCACUCGAGUGAGAAAAUACUUUAUUAACACAGUUUUUUGGCCAGACUGGUU
((.(---(((........-----......(((((((.........))))))).((.(((((((..............))))))).)))))).))... ( -17.44)
>DroPer_CAF1 70084 89 - 1
-----CAUCUGCCUCCGCCCCCUGCGUCGAGUGUGUUUGCUGGUUGCACUCGAGCGAGCAAAUACUUUAUUAACACAGUUUUUGGGGCAACGU---U
-----...........((((((((.((..(..(((((((((.(((.......))).)))))))))....)..)).))).....))))).....---. ( -29.60)
>consensus
CGCU_CUGUGGCAACCGC_____ACGUUGCAAGUGUUUGCUGGCUGCACUCGAGUGAGCAAAUACUUUAUUAACACAGUUUUUUGGCCAACGAGCAU
........................(((((.(((((((((((.(((.......))).)))))))))))........(((....)))..)))))..... (-14.05 = -14.58 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:19 2006