Locus 3260

Sequence ID 2R_DroMel_CAF1
Location 11,146,433 – 11,146,525
Length 92
Max. P 0.522439
window5346

overview

Window 6

Location 11,146,433 – 11,146,525
Length 92
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 84.07
Mean single sequence MFE -26.55
Consensus MFE -18.17
Energy contribution -19.23
Covariance contribution 1.06
Combinations/Pair 1.23
Mean z-score -2.05
Structure conservation index 0.68
SVM decision value -0.02
SVM RNA-class probability 0.522439
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11146433 92 + 20766785
CUACGCUUUUGAGCGUGAAAUAGCCGGAGCUGCAAGC---GA-AAAGAAAGCAAAGUUGGG-CAAACUAGCAAUUUGCUAUGCUCUACAAGGCACUU---------
.((((((....)))))).....((((((((.((((((---..-.......))...(((((.-....)))))...))))...)))))....)))....--------- ( -27.90)
>DroSec_CAF1 61214 92 + 1
CCACGCUUUUGAGCGUGAAAUAACCGGAGCUGACAGC---GA-AAAGAAAGCAAAGUUAUG-CAAACUAGCAAUUUGCUAUGCUCUACAAGGCACUU---------
....(((((.((((((............((.....))---..-......((((((....((-(......))).))))))))))))...)))))....--------- ( -22.10)
>DroSim_CAF1 59718 92 + 1
CCACGCUUUUGAGCGUGAAAUAGCCGGAGCUGACAGC---GA-AAAGAAAGCAAAGUUGGG-CAAACUAGCAAUUUGCUAUGCUCUACAAGGCACUU---------
.((((((....)))))).....((((((((....(((---((-(..(....)...(((((.-....)))))..))))))..)))))....)))....--------- ( -27.60)
>DroEre_CAF1 63995 93 + 1
CCACGCUUUUGAGCGUGAAAUAGCCGGAGUUGACAGC---AAGAAAGAAAGCAAAGUUUGG-CAAACUUGCAAUUCGCUAUGCUCUACAAGGCACUU---------
.((((((....)))))).....(((...((....(((---(((...(((.((((.(((...-..)))))))..))).)).))))..))..)))....--------- ( -23.30)
>DroYak_CAF1 60649 101 + 1
CCACGCUUUUGAGCGUGAAAUAGCUGGCGCUGACAGC---GA-AAAGAAAGCAAAGUUGGG-CAAACUAGCAAUUUGCUAUGCUCUACAAGGCACUUUUUCCUCCU
.((((((....)))))).....((((.......))))---((-((((..(((((((((((.-....)))))..)))))).((((......))))))))))...... ( -29.80)
>DroAna_CAF1 59986 96 + 1
UCACGCUUCUGAGCGUGAAAUGGCGGUAGCUGCAAGCCAAGA-AAAUAAGGAAAAAUUGCCAAAAACUUGCAAUUUGCAGCGCUCUAAAAAGCGCUU---------
(((((((....)))))))...(((....(((((...((....-......))..(((((((.........))))))))))))(((......)))))).--------- ( -28.60)
>consensus
CCACGCUUUUGAGCGUGAAAUAGCCGGAGCUGACAGC___GA_AAAGAAAGCAAAGUUGGG_CAAACUAGCAAUUUGCUAUGCUCUACAAGGCACUU_________
....(((((.(((((((...((((....))))..................((((((((((......)))))..))))))))))))...)))))............. (-18.17 = -19.23 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:14 2006