Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,133,788 – 2,133,882 |
Length | 94 |
Max. P | 0.631975 |
Location | 2,133,788 – 2,133,882 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 72.67 |
Mean single sequence MFE | -26.35 |
Consensus MFE | -14.86 |
Energy contribution | -18.70 |
Covariance contribution | 3.84 |
Combinations/Pair | 1.09 |
Mean z-score | -1.63 |
Structure conservation index | 0.56 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2133788 94 + 20766785 CGAAUUGGAGCCGUUCAUGCUCAAAAGGAGCGUCUAAUUACACCCCGUUU-GUUGGCAUUCGAA----AACUCGUUUCAAAAA------------AACAAAAUUGUGGAAG ..(((((((..(((((...........)))))))))))).(((....(((-(((......(((.----...))).........------------))))))...))).... ( -15.56) >DroSec_CAF1 112489 111 + 1 GGAAUUAGAGCUGUUCUUGCUCAAAAGGACCGUUUAAUUACACCCCAUUUUUUUGAUAUUCGAUUCGCUAGUCGAUUUAGUCGAUUUGGUCCUUUGACUAAAUCGUUGGGG ..(((((((.(.((((((......)))))).))))))))...(((((.......(((..(((((......)))))....)))(((((((((....)))))))))..))))) ( -32.70) >DroSim_CAF1 116439 111 + 1 UGAAUUGGAACCGUUCUUGCUCAAAAGGACCGUUUAAUUACACCCCAUUUUUUUGAUAUUCGAUUCGCUAGUCGAUUUAGUCGAAUUAGUCCUUUGACUAAAUCUUUGGGG (((((((.(((.((((((......)))))).)))))))).))(((((..............(((......)))((((((((((((.......))))))))))))..))))) ( -30.80) >consensus CGAAUUGGAGCCGUUCUUGCUCAAAAGGACCGUUUAAUUACACCCCAUUUUUUUGAUAUUCGAUUCGCUAGUCGAUUUAGUCGA_UU_GUCCUUUGACUAAAUCGUUGGGG ..(((((((.(.((((((......)))))).))))))))...((((...............(((......)))((((((((((((.......))))))))))))...)))) (-14.86 = -18.70 + 3.84)
Location | 2,133,788 – 2,133,882 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 72.67 |
Mean single sequence MFE | -23.07 |
Consensus MFE | -14.28 |
Energy contribution | -15.62 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.12 |
Mean z-score | -1.42 |
Structure conservation index | 0.62 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2133788 94 - 20766785 CUUCCACAAUUUUGUU------------UUUUUGAAACGAGUU----UUCGAAUGCCAAC-AAACGGGGUGUAAUUAGACGCUCCUUUUGAGCAUGAACGGCUCCAAUUCG ................------------.....(((..(((((----(((..((((...(-(((.(((((((......))))))).)))).))))))).)))))...))). ( -21.20) >DroSec_CAF1 112489 111 - 1 CCCCAACGAUUUAGUCAAAGGACCAAAUCGACUAAAUCGACUAGCGAAUCGAAUAUCAAAAAAAUGGGGUGUAAUUAAACGGUCCUUUUGAGCAAGAACAGCUCUAAUUCC (((((.((((((((((.............))))))))))......((........)).......)))))...........((.......((((.......)))).....)) ( -24.52) >DroSim_CAF1 116439 111 - 1 CCCCAAAGAUUUAGUCAAAGGACUAAUUCGACUAAAUCGACUAGCGAAUCGAAUAUCAAAAAAAUGGGGUGUAAUUAAACGGUCCUUUUGAGCAAGAACGGUUCCAAUUCA .......(((((((((.((.......)).))))))))).....(.((((((....((((((....(((.(((......))).))))))))).......)))))))...... ( -23.50) >consensus CCCCAACGAUUUAGUCAAAGGAC_AA_UCGACUAAAUCGACUAGCGAAUCGAAUAUCAAAAAAAUGGGGUGUAAUUAAACGGUCCUUUUGAGCAAGAACGGCUCCAAUUCA ......((((((((((.............))))))))))...........((((...........(((.(((......))).)))....((((.......))))..)))). (-14.28 = -15.62 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:38 2006