Locus 3259

Sequence ID 2R_DroMel_CAF1
Location 11,145,770 – 11,145,860
Length 90
Max. P 0.950524
window5345

overview

Window 5

Location 11,145,770 – 11,145,860
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 96.12
Mean single sequence MFE -22.65
Consensus MFE -21.47
Energy contribution -21.80
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 0.95
SVM decision value 1.40
SVM RNA-class probability 0.950524
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11145770 90 + 20766785
GACCCUAUUAAUUGAACGCUUGUUUAUUUAUGGGCCUCGUUAUUUGAGUGCAUUCAAGUGUUUUGUACUGCGAGUGGCCACGCCCC-UUCU
........(((.(((((....))))).))).((((...((((((((((((((..(....)...)))))).))))))))...)))).-.... ( -22.80)
>DroSec_CAF1 60551 91 + 1
GACCCUAUUAAUUGAACGCUUGUUUAUUUAUGGGCCUCGUUAUUUGAGUGCAUUCAAGUGUUUUGUACUGCGAGUGGCCACGCCCCCUUCU
........(((.(((((....))))).))).((((...((((((((((((((..(....)...)))))).))))))))...))))...... ( -22.80)
>DroSim_CAF1 59062 91 + 1
GACCCUAUUAAUUGAACGCUUGUUUAUUUAUGGGCCUCGUUAUUUGAGUGCAUUCAAGUGUUUUGUACUGCGAGUGGCCACGCCCCUUUCU
........(((.(((((....))))).))).((((...((((((((((((((..(....)...)))))).))))))))...))))...... ( -22.80)
>DroEre_CAF1 63348 90 + 1
GACCCUAUUAAUUGAACGCUUGUUUAUUUAUGGGCCUCGUUAUUUGAGUGCAUUCAAGUGUUUUGUACUGCGAGUGGCCACGCCC-CUUCU
........(((.(((((....))))).))).((((...((((((((((((((..(....)...)))))).))))))))...))))-..... ( -22.80)
>DroYak_CAF1 59979 91 + 1
GACCCUAUUAAUUGAACGCUUGUUUAUUUAUGGGCCUCGUUAUUUGAGUGCAUUCAAGUGUUUUGUACUGCGAGUGGCCACGCCCCCUUCU
........(((.(((((....))))).))).((((...((((((((((((((..(....)...)))))).))))))))...))))...... ( -22.80)
>DroAna_CAF1 59347 91 + 1
GACCCUAUUAAUUGAACUCUUGUUUAUUUAUGGGCCUCGUUAUUUGAGUGCAUCCAAGUGUUUUGUACGCAGAGUGGCCACGCCCUCUCUU
...((...(((.(((((....))))).))).))((((((.....)))).))......((((.....))))((((.(((...)))))))... ( -21.90)
>consensus
GACCCUAUUAAUUGAACGCUUGUUUAUUUAUGGGCCUCGUUAUUUGAGUGCAUUCAAGUGUUUUGUACUGCGAGUGGCCACGCCCCCUUCU
........(((.(((((....))))).))).((((...((((((((((((((...........)))))).))))))))...))))...... (-21.47 = -21.80 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:13 2006