| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,135,725 – 11,135,817 |
| Length | 92 |
| Max. P | 0.544002 |
| Location | 11,135,725 – 11,135,817 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 69.76 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11135725 92 + 20766785 CUGCUCUCGCCUCUCGCACAACAUGGCGUAUGUGUAAUCAAGUGAAUGGUGCCACAUGCCACACA-------CAUACACACACGCAC------------ACAGACUAACGC (((.....((.....))......((((((.((((((.....(((..((((.......))))..))-------).)))))).)))).)------------))))........ ( -20.80) >DroPse_CAF1 48220 78 + 1 CUC---------UUCGUACAGCGUGGCGUAUGUGUAAUCAAGUGAAUGGUGCCACAUGCCAAACA-------CUGGCACAUGGC-UC----------------UCUUCCCC ...---------..(((((.((...)))))))...........(((.((.((((..(((((....-------.)))))..))))-.)----------------).)))... ( -20.40) >DroEre_CAF1 53178 89 + 1 CUGCUCUCGCCUCUCGCACAACAUGGCGUAUGUGUAAUCAAGUGAAUGGUGCCACAUGCCACAUGCCACACACAUGCACAC----------------------ACUAACAC ........(((.............)))((((((((...((.(((.(((......)))..))).))....))))))))....----------------------........ ( -19.82) >DroYak_CAF1 49586 111 + 1 CUGCUCUCGCCUCUCGCACAACAUGCCGUAUGUGUAAUCAAGUGAAUGGUGCCACAUGCCACAUGCCACACACAUGCACACACACACUAGCACUAACACUAACACUAACAC .((((..........(((.....))).((((((((...((.(((.(((......)))..))).))....))))))))...........))))................... ( -19.90) >DroAna_CAF1 49209 84 + 1 CUGCUCUCGCCU--CGCACAACAUGGCGUAUGUGUAAUCAAGUGAAUGGUGCCACAUGCCACGCA-------CAUACACACGCGU------------------ACUAAUAC ........(((.--..........)))((((((((......(((..((((.......))))..))-------)......))))))------------------))...... ( -21.10) >DroPer_CAF1 47440 78 + 1 CUC---------UUCGUACAGCGUGGCGUAUGUGUAAUCAAGUGAAUGGUGCCACAUGCCAAACA-------CUGGCACAUGGC-UC----------------UCUUCCCC ...---------..(((((.((...)))))))...........(((.((.((((..(((((....-------.)))))..))))-.)----------------).)))... ( -20.40) >consensus CUGCUCUCGCCUCUCGCACAACAUGGCGUAUGUGUAAUCAAGUGAAUGGUGCCACAUGCCACACA_______CAUGCACACGCC__C________________ACUAACAC ...........................(((((((..((((......))))..))))))).................................................... (-11.10 = -11.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:10 2006