Locus 3256

Sequence ID	2R_DroMel_CAF1
Location	11,129,793 – 11,129,883
Length	90
Max. P	0.973571

overview

Window 1

Location	11,129,793 – 11,129,883
Length	90
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	93.38
Mean single sequence MFE	-33.42
Consensus MFE	-30.52
Energy contribution	-30.68
Covariance contribution	0.16
Combinations/Pair	1.04
Mean z-score	-1.59
Structure conservation index	0.91
SVM decision value	1.71
SVM RNA-class probability	0.973571
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11129793 90 - 20766785
CCACCCGGCUCUUUCUCGCUCGCUCGCUUACUGCUCCUGUCUCUUUCUGGUUGAUGGGACAUCGGAUGGC---AGGAGCGACCUUAGCCAAGG
......((((.....(((((((....)...(((((((((((((..((.....)).))))))..)))..))---))))))))....)))).... ( -30.20)
>DroSec_CAF1 41680 93 - 1
CCAGCCGGCUCUUUCUCGCUCGCUCGCUUUCUGCUCCCGUCUCUUUCUGGUUGAUGGGACAUCGGAUGGCAGCAGGAGCGACCUUAGCCAAGG
......((((.....(((((((((.(((.((((.(((((((.((....))..)))))))...)))).))))))..))))))....)))).... ( -36.80)
>DroSim_CAF1 40558 93 - 1
CCAGCCGGCUCUUUCUCGCUCGCUCGCUUUCUGCUCCCGUCUCUUUCUGGUUGAUGGGACAUCGGAUGGCAGCAGGAGCGACCUUAGCCAAGG
......((((.....(((((((((.(((.((((.(((((((.((....))..)))))))...)))).))))))..))))))....)))).... ( -36.80)
>DroEre_CAF1 47224 86 - 1
CCACCCGGCUCUUUCUCGCUC----GCUUUCUGCUCCUGUCUCUUUCUGGUUGAUGGGACAUCGGAUGGC---AGGAGCGACCUUAGCCAAGG
......((((.....((((((----(((.((((.(((((((.((....))..)))))))...)))).)))---..))))))....)))).... ( -30.10)
>DroYak_CAF1 43391 90 - 1
CCACCCGGCUCUUUCUCGCUCGCUCGCUCGCUGCUCCCGUCUCUUUCUGGUCGAUGGGACAUCGGAUGGC---AGGAGCGACCUUAGCCAAGG
......((((.....((((((((.((..((.((.(((((((.((....))..))))))))).))..))))---..))))))....)))).... ( -33.20)
>consensus
CCACCCGGCUCUUUCUCGCUCGCUCGCUUUCUGCUCCCGUCUCUUUCUGGUUGAUGGGACAUCGGAUGGC___AGGAGCGACCUUAGCCAAGG
......((((.....((((((....(((.((((.(((((((.((....))..)))))))...)))).))).....))))))....)))).... (-30.52 = -30.68 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:09 2006