Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,116,665 – 11,116,758 |
Length | 93 |
Max. P | 0.671030 |
Location | 11,116,665 – 11,116,758 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 89.15 |
Mean single sequence MFE | -38.85 |
Consensus MFE | -35.85 |
Energy contribution | -35.72 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.40 |
Structure conservation index | 0.92 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11116665 93 + 20766785 UGUGGUCUGGUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCUGCCGCUCCUCCGCCGCUCUU------------- .(((((..((.(((((((((((((((((((((((((....)))))...)).))))(....).)))))....))).)))))).)))))))....------------- ( -38.30) >DroSec_CAF1 28594 103 + 1 UGUGGUCUGGUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCUGCCGCUCCUCUGCCGCUCCUCUGCCGC---UCC .(((((..((.((((((((((....(((((((((((....)))))...)).))))(((.(.((..........)).).))))))).)))))).)))))))---... ( -39.30) >DroSim_CAF1 27170 104 + 1 UGUGGUCUGGUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCUGCCGCUCCUCCGCCGCUCCUCCGCCGCUCCU-- ...((..((((((((.((.(((..((.(((((((((....)))))........(((((............))))).))))))..)))))..))))))))..)).-- ( -39.90) >DroEre_CAF1 30677 104 + 1 UGUGGUCUGCUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCAGCCACUCCGCUGCCACUCCUCUGCCGCUCCG-- .(((((.....(((((((((.....(((((((((((....)))))...)).))))(((...(((........)))...))).))).))))))...)))))....-- ( -37.90) >consensus UGUGGUCUGGUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCUGCCGCUCCUCCGCCGCUCCUCUGCCGC___U__ .(((((..((.(((((((((((((((((((((((((....)))))...)).))))(....).)))))....))).)))))).)))))))................. (-35.85 = -35.72 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:08 2006