Locus 3253

Sequence ID 2R_DroMel_CAF1
Location 11,112,622 – 11,112,712
Length 90
Max. P 0.645835
window5338

overview

Window 8

Location 11,112,622 – 11,112,712
Length 90
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 79.00
Mean single sequence MFE -20.60
Consensus MFE -14.04
Energy contribution -13.35
Covariance contribution -0.69
Combinations/Pair 1.19
Mean z-score -1.29
Structure conservation index 0.68
SVM decision value 0.23
SVM RNA-class probability 0.645835
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11112622 90 - 20766785
----------------------------AAAAAUUUAAAAUGAAAUACAAACGUUCUGGCUGAAUGGCUUGGACAUGGACUUAAACCGGAAGCGGAAACGUAAACAUUACUUUCAAUA
----------------------------............(((((.......((((.((((....)))).)))).(((.......)))...(((....))).........)))))... ( -16.40)
>DroVir_CAF1 37778 116 - 1
ACA-AAAAAAUUUGUUGGGCAGCUGGAAGCAAAUUUAAAAUGAAAUACAAACGUUCUGGCUGAAUGGCUU-GACAUGGACUUAAACCGGAAACGGAAACGUAAACAUUACUUUCAAUA
...-........(((..(((.((.....)).....................(((((.....)))))))).-.)))((((......(((....)))....(((.....))).))))... ( -23.70)
>DroPse_CAF1 23863 90 - 1
----------------------------AAAAAUUUAAAAUGAAAUACAAACGUUCUGGGUGAACGGCUCGGAUACGGACUUAAGCCGGAAGCGGAAACGUAAACAUUACUUUCAAUA
----------------------------............(((((........((((((.(....((..((....))..))..).))))))(((....))).........)))))... ( -18.80)
>DroGri_CAF1 37420 117 - 1
UUGUUAUUUUUUUGUUGUGGAGCUGGAAGCAAAUUUAAAAUGAAAUACAAACGUUCUGGCUGAAUGGCUU-GACAUGGACUUAAACCGGAAACGGAAACGUAAACAUUACUUUCAAUA
.((((..........(((.((((((....))....................(((((.....)))))))))-.)))..........(((....))).......))))............ ( -21.00)
>DroMoj_CAF1 40570 116 - 1
ACG-AAAAAAUUUGUUGGGCAGCUGGAAGCAAAUUUAAAAUGAAAUACAAACGUUCUGGCUGAAUGGCUU-GACAUGGACUUAAACCGGAAACGGAAACGUAAACAUUACUUUCAAUA
..(-(((.....(((..(((.((.....)).....................(((((.....)))))))).-.)))..........(((....)))...............)))).... ( -24.90)
>DroPer_CAF1 23929 90 - 1
----------------------------AAAAAUUUAAAAUGAAAUACAAACGUUCUGGGUGAACGGCUCGGAUACGGACUUAAGCCGGAAGCGGAAACGUAAACAUUACUUUCAAUA
----------------------------............(((((........((((((.(....((..((....))..))..).))))))(((....))).........)))))... ( -18.80)
>consensus
____________________________AAAAAUUUAAAAUGAAAUACAAACGUUCUGGCUGAAUGGCUU_GACAUGGACUUAAACCGGAAACGGAAACGUAAACAUUACUUUCAAUA
........................................(((((......(((((.....))))).........(((.......)))...(((....))).........)))))... (-14.04 = -13.35 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:06 2006