Locus 3252

Sequence ID 2R_DroMel_CAF1
Location 11,107,742 – 11,107,841
Length 99
Max. P 0.744093
window5337

overview

Window 7

Location 11,107,742 – 11,107,841
Length 99
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 77.45
Mean single sequence MFE -20.02
Consensus MFE -11.39
Energy contribution -12.45
Covariance contribution 1.06
Combinations/Pair 1.06
Mean z-score -1.77
Structure conservation index 0.57
SVM decision value 0.46
SVM RNA-class probability 0.744093
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11107742 99 + 20766785
AGUCGUAAACAUCACAACAACA-GGCCAAAUGCCAAAUGGCCAAAAAGCUUAAACAAGCUGCCAAUAUUUUGGUGUCUAUUUCCGCGUGGUCUACGCCGC
.(.((((...(((((.......-(((((.........)))))....(((((....)))))(((((....)))))............))))).)))).).. ( -23.80)
>DroPse_CAF1 19124 77 + 1
AGCCACACACA----------------CAAUGGCAAAUGCC--AAAAGCUUAAACAAGCUGCCAAUAUUUUGGUGUCUAUUUCCGCGUUC-----CCCCA
.((((......----------------...)))).(((((.--...(((((....)))))(((((....)))))..........))))).-----..... ( -16.30)
>DroSec_CAF1 19867 99 + 1
AGUCGUAAACAUCACAACAACA-GGCCAAAUGCCAAAUGGCCAAAAACCUUAAACAAGCUGCCAAUAUUUUGGUGUCUAUUUCCGCGUGGUCUACGCCGC
.(.((((...(((((.......-(((((.........)))))..............((.((((((....)))))).))........))))).)))).).. ( -21.30)
>DroYak_CAF1 21237 99 + 1
AGUCGUAAACAUCACAACAACA-GGCCAAAUGCCAAAUGGCCAAAAAGCUUAAACAAGCUGCCAAUAUUUUGGUGUCUAUUUCCGCGUGGUCUACGCCGC
.(.((((...(((((.......-(((((.........)))))....(((((....)))))(((((....)))))............))))).)))).).. ( -23.80)
>DroAna_CAF1 22222 91 + 1
A---------AUGACAACAAUAAAGCCAAAUGCCAAAUGGCCAAAAAGCUUAAACAAGCUGCCAAUAUUUUGGUGUCUAUUUCCGCGUGGUCUACUCCGC
.---------..(((................(((....))).....(((((....)))))(((((....)))))))).......(((..(....)..))) ( -18.60)
>DroPer_CAF1 19173 77 + 1
AGCCACACACA----------------CAAUGGCAAAUGCC--AAAAGCUUAAACAAGCUGCCAAUAUUUUGGUGUCUAUUUCCGCGUUC-----CCCCA
.((((......----------------...)))).(((((.--...(((((....)))))(((((....)))))..........))))).-----..... ( -16.30)
>consensus
AGUCGUAAACAUCACAACAACA_GGCCAAAUGCCAAAUGGCCAAAAAGCUUAAACAAGCUGCCAAUAUUUUGGUGUCUAUUUCCGCGUGGUCUACGCCGC
.......................(((((...(((....))).....(((((....)))))(((((....))))).............)))))........ (-11.39 = -12.45 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:05 2006