Locus 3251

Sequence ID 2R_DroMel_CAF1
Location 11,104,504 – 11,104,607
Length 103
Max. P 0.940261
window5336

overview

Window 6

Location 11,104,504 – 11,104,607
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 65.47
Mean single sequence MFE -21.52
Consensus MFE -5.53
Energy contribution -6.53
Covariance contribution 1.00
Combinations/Pair 1.25
Mean z-score -2.62
Structure conservation index 0.26
SVM decision value 1.31
SVM RNA-class probability 0.940261
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11104504 103 - 20766785
AGCCAUUCAGCUGCAUAUA--UAAAU--CAAAAAUAUGUAUGUAUAUGUAUAUGUUGCACAUCCCAUCUGUUGCCUGAUUUUCUACUAAAGAAAUUGGGUGAACAAC
.((....((..((((((((--((...--((......))..))))))))))..))..))..........(((((((..(((((........)))))..))).)))).. ( -21.30)
>DroSec_CAF1 16692 90 - 1
AGCCAUUCAGCUGCAUAUA--UAAAU--CAAAAAUAUAGAUUU--AUGUA-----------UCGCAUCUGCUGCCUGAUUUUCUACCAAAGAAAUUGGGUGAACAAC
.......(((.((((((((--(((((--(.........)))))--)))))-----------).))).)))..(((..(((((........)))))..)))....... ( -23.50)
>DroSim_CAF1 15554 101 - 1
AGCCAUUCAGCUGCAUAUA--UAAAU--CAAAAAUAUAGAUUU--AUGUAUAUGUUGCACAUCGCAUCUGCUGCCUGAUUUUCUACCAAAGAAAUUGGGUGAACAAC
.......(((.((((((((--(((((--(.........)))))--))))))(((.....))).))).)))..(((..(((((........)))))..)))....... ( -22.40)
>DroEre_CAF1 16979 100 - 1
GCCCAUGCUGCUGCAUAUACAUAAAUAACAAAAA-----AUAU--AUGUACACUUUGCAUAGCUCAUCGGCUGCCUGGUUUUGUACCAAAGAAAUUGGGCGAACAAC
(((...((((.((((..((((((.((........-----)).)--))))).....)))))))).....)))((((..(((((........)))))..))))...... ( -26.60)
>DroWil_CAF1 29206 79 - 1
AGCUAACCAUUUUGAUGGC--UAAAU--AGGAAAUAACCAAUU--AUUAU-----------UGGUAUUUUCUUUCUUAUAUACUGGCAACGCAUCU-----------
.((((.((((....)))).--.....--((((((((.(((((.--...))-----------)))))))))))...........)))).........----------- ( -16.40)
>DroYak_CAF1 17786 80 - 1
AACCAUGCUGCUGCAUAUA--UAAAU--CAAAAA-----A--U--AUGUAC--------------AUCUGCUGCCUGGUUUUGCACCAAAGAAAUUGGGCGAACAAC
(((((.((.(((((((((.--.....--......-----)--)--))))).--------------....)).)).)))))((((.((((.....))))))))..... ( -18.90)
>consensus
AGCCAUUCAGCUGCAUAUA__UAAAU__CAAAAAUAU__AUUU__AUGUA___________UCGCAUCUGCUGCCUGAUUUUCUACCAAAGAAAUUGGGUGAACAAC
........................................................................(((..(((((........)))))..)))....... ( -5.53 =  -6.53 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:04 2006