Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,092,413 – 11,092,513 |
Length | 100 |
Max. P | 0.549161 |
Location | 11,092,413 – 11,092,513 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 81.38 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -15.40 |
Energy contribution | -15.27 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.06 |
Mean z-score | -1.52 |
Structure conservation index | 0.65 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11092413 100 - 20766785 GGCGAUGCAUAGAAAUAAAAAUAAAGACCCAGUGGCAG----------UGAGUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCCAGCCAGUCGAGA (((......((....))...............((((..----------((((((((((((...((.....))....)))))).)))))).)))).....)))........ ( -23.10) >DroPse_CAF1 5243 93 - 1 ---GAUGCAUAGAAAUAAAAAGCGAG------UGGCAGAAGCACUCACUGUCUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCGUUCGAGCCAAUCGAGCC-------- ---...((((..........((.(((------((.......))))).))...(((((....)))))..))))(((......)))((((((.....)))))).-------- ( -26.60) >DroSim_CAF1 3410 98 - 1 GGCGAUGCAUAGAAAUAAAAAUAAAGACCCAGUGGCAG----------UGAGUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCGAGCCAGUCGA-- (((...((.((....))..............(((((.(----------(..((((((....))))))...)).)))))...))...((((.....)))))))......-- ( -24.00) >DroYak_CAF1 4952 91 - 1 GGCGAUGCAUAGAAAUAAAAAUAAAGAACCAGUGGCAG----------UGAGUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCGAGC--------- (((......((....))..............(((((.(----------(..((((((....))))))...)).)))))...))).(((((.....))))).--------- ( -22.90) >DroAna_CAF1 5510 92 - 1 GCAGAUGCAUAGAAAUAAAAAUAAAGACCCAGUGGCAG----------CGACUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCGAGUC-------- (((.((((.((....))..(((((((...((((.(...----------).)))))))))))..))))..)))(((......)))((((((.....)))))).-------- ( -22.40) >DroPer_CAF1 5210 99 - 1 ---GAUGCAUAGAAAUAAAAAGCGAGUAACUGUGGCAGAAGCACUCACUGUCUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCGUUCGAGCCAAUCGAGCC-------- ---...((((..........((.((((..((........)).)))).))...(((((....)))))..))))(((......)))((((((.....)))))).-------- ( -23.80) >consensus GGCGAUGCAUAGAAAUAAAAAUAAAGACCCAGUGGCAG__________UGACUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCGAGCC________ ......((.((....))...............((((................(((((....)))))......(((......)))......)))).....))......... (-15.40 = -15.27 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:00 2006