| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,089,083 – 11,089,184 |
| Length | 101 |
| Max. P | 0.524696 |
| Location | 11,089,083 – 11,089,184 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.52 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -11.89 |
| Energy contribution | -11.95 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11089083 101 - 20766785 UAACCGGAAAAGGGCAGGACGACUCUAUGUCUUCCUCAAUCUGACCAAACACUCCGCUAAUCGUAUGGUUAAUAACUAAAAUA------CCUGUGGAUAAUCUUUAA ...(((....((((.((((.(((.....))).)))))....((((((.((............)).))))))............------))).)))........... ( -18.90) >DroSec_CAF1 1172 96 - 1 UAACCGGAAACGGGCAGGACGACUCUAUGUCUUCCUUAAUCUGACCAAACACUCCGCUAAUCGUAAGGUUAAUA-----CAUA------CCUGUGGAUAAUCUUUAA ...(((....)))..((((.(((.....))).))))................((((((((((....)))))...-----....------...))))).......... ( -23.00) >DroEre_CAF1 1145 101 - 1 UAACCGGAAAAGGGCAGAACGACUCUAUGUCUUCCUUAAUCUGACCAAACACUCCGCUAAUCGUAUGGUUU-UA-----UAUACUUAACCCUUCUGAUAAUAUUUAA ....((((..((((..(((.(((.....))))))....((..(((((.((............)).))))).-.)-----)........))))))))........... ( -16.30) >DroYak_CAF1 1206 89 - 1 CAACCGGAAAAGGGCAGAACGACUCUAUGUCUUUCUUAAUCUGCCCAAACACUCCACUAAUCGUAAGGUUU-UA-----UAUCCUUAACCCUU------------AA .....((....(((((((..(((.....)))........))))))).................(((((...-..-----...)))))..))..------------.. ( -18.90) >consensus UAACCGGAAAAGGGCAGAACGACUCUAUGUCUUCCUUAAUCUGACCAAACACUCCGCUAAUCGUAAGGUUA_UA_____UAUA______CCUGUGGAUAAUCUUUAA .((((((...(((..((((.(((.....))).))))...)))..)).........((.....))..))))..................................... (-11.89 = -11.95 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:59 2006