Locus 3245

Sequence ID 2R_DroMel_CAF1
Location 11,084,620 – 11,084,722
Length 102
Max. P 0.596609
window5329

overview

Window 9

Location 11,084,620 – 11,084,722
Length 102
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 86.18
Mean single sequence MFE -14.90
Consensus MFE -11.66
Energy contribution -11.98
Covariance contribution 0.31
Combinations/Pair 1.18
Mean z-score -1.50
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.596609
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11084620 102 + 20766785
AUUCACACAAACAGUAGAUAUCGUCUAGGAAUUUGAACAAUU-UUCGGAUCUUAACGAUACACUCAACAUAAAAAUUUUUAAGAAUAAAACUAUUUUACUGAA
...........(((((((((((((.(((((.((((((.....-)))))))))))))))))................(((((....)))))....))))))).. ( -17.40)
>DroSec_CAF1 2947 102 + 1
AUUCACACAAACAGUAGAUAUCGUCUAGGAAUUGAAACAUUU-UUCUGAUCUUAACGAUACAUUCAAUAACACAAUUUUAAAAAAUAAAACGAUUUUACAGAA
.............(((((((((((.(((((...((((....)-)))...)))))))))))...............(((((.....)))))....))))).... ( -12.00)
>DroEre_CAF1 3059 103 + 1
CUUCACGCAAACAGUAGAUAUCGUCUGGGAAUUUGAACAUUUUUUCGGAUCUUAUCGAUAUACUCAACAAAAACAUAUUUAAAAAUAAAACGAUUUUACUGAA
...........(((((((((..(((((..((..(....)..))..)))))..))))((.....))...............................))))).. ( -16.00)
>DroYak_CAF1 3035 102 + 1
ACUCACAUAAACAGUAGAUAUCGUCUGAGAAUUUGAACAUUU-UUCGGAUCUUAACGAUAUACUCAACAAAAACAUAUCUAAAAGUAAAACGAUUUUAAUGAA
.....(((.....(.(((((((((.(((((.((((((.....-)))))))))))))))))).)))................(((((......))))).))).. ( -14.20)
>consensus
AUUCACACAAACAGUAGAUAUCGUCUAGGAAUUUGAACAUUU_UUCGGAUCUUAACGAUACACUCAACAAAAAAAUAUUUAAAAAUAAAACGAUUUUACUGAA
...........(((((((((((((.(((((.((((((......)))))))))))))))))..............((((....))))........))))))).. (-11.66 = -11.98 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:58 2006