Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,081,926 – 11,082,046 |
Length | 120 |
Max. P | 0.835438 |
Location | 11,081,926 – 11,082,046 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -41.80 |
Consensus MFE | -27.00 |
Energy contribution | -27.33 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.30 |
Mean z-score | -1.75 |
Structure conservation index | 0.65 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11081926 120 - 20766785 CUUUGCAACAGAUCAGGAUUCGUGGUGAGGCUGAGGCCUUUGCCAUUGCGGCCAAGGCUAAAGCAGAGGCCGAGCAGAUGGCCAUGAAGGCAGAGGCCUAUCGUGAGUACCGUGAGGCUG ........(((.((((((((((((((.(((((...((((((((((((.(((((...((....))...)))))....))))))...))))))...)))))))))))))).)).)))..))) ( -52.60) >DroVir_CAF1 264 114 - 1 ------UGCAGAUAAAGAUACGCGGUGAAGCCGAAGCAUUUGCCAUUGCUGCCAAGGCUAAGGCUGAGGCUGAGCAAAUGGCGCAGAAGGCCGACGCUUGGCGUGAAUACCGCGAAGCCG ------..............(((((((..(((.((((.((.(((.((((.((((..(((..(((....))).)))...))))))))..))).)).))))))).....)))))))...... ( -42.60) >DroGri_CAF1 410 117 - 1 ---UAUUGCAGAUUAAAAUCCGUGGCGAAGCUGAGGCGUUUGCCAUUGCGGCCAAGGCAAAGGCUGAGGCCGAGCAAAUGGCACAGAAGGCCGAUGCCUAUCGUGAAUAUCGUGAGGCUG ---....((((((....))).((((((((((....)).)))))))))))((((.(((((..((((...((((......))))......))))..))))).(((((.....))))))))). ( -40.80) >DroWil_CAF1 273 119 - 1 -UAUCUUGUAGAUCAAAAUACGUGGUGAGGCUGAGGCCUUUGCCAUUGCGGCCAAGGCCAAGGCUGAGGCAGAGCAAAUGGCCCAGAAAGCAGAAGCCUAUAGGGAAUAUCGGGAAGCAG -..((((((((...........(((.(((((....))))).((((((((.(((..(((....)))..)))...)).)))))))))....((....))))))))))............... ( -37.30) >DroMoj_CAF1 409 120 - 1 UGCUAUUAUAGAUCAAAAUACGUGGCGAAGCUGAAGCAUUUGCUAUUGCAGCUAAGGCUAAAGCAGAAGCAGAGCAAAUGGCACAGAAGGCAGAUGCUUGGCGUGAAUACCGCGAGGCCG .......................(((...(((.(((((((((((.((...((((..(((...((....))..)))...))))...)).))))))))))))))(((.....)))...))). ( -36.50) >DroAna_CAF1 430 120 - 1 CCUUCUUGCAGAUCAAAAUCCGUGGUGAGGCUGAAGCCUUUGCCAUUGCGGCCAAGGCCAAGGCGGAGGCGGAGCAGAUGGCCCAAAAGGCAGACGCAUGGCGCGAAUAUCGGGAAGCUG .(((((((...((.....(((((.(((...(((..(((((((((.....(((....)))..)))))))))((.((.....))))......)))...))).))).))))..)))))))... ( -41.00) >consensus ___UAUUGCAGAUCAAAAUACGUGGUGAAGCUGAAGCCUUUGCCAUUGCGGCCAAGGCUAAGGCUGAGGCAGAGCAAAUGGCCCAGAAGGCAGACGCCUAGCGUGAAUACCGCGAAGCUG ....................(((((((..((..((((.((((((.((..(((((..((....((....))...))...)))))..)).)))))).))))...))...)))))))...... (-27.00 = -27.33 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:57 2006