Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,081,166 – 11,081,257 |
Length | 91 |
Max. P | 0.960717 |
Location | 11,081,166 – 11,081,257 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 99.12 |
Mean single sequence MFE | -16.30 |
Consensus MFE | -16.30 |
Energy contribution | -16.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 1.00 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11081166 91 + 20766785 UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA ..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... ( -16.30) >DroSec_CAF1 3986 91 + 1 UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA ..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... ( -16.30) >DroSim_CAF1 1813 91 + 1 UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA ..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... ( -16.30) >DroEre_CAF1 3931 89 + 1 UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUC--UCUGAGUGUGUGUGUAAAACAUGUUGCAAAA ..(((((((((((((......(((((.....)))))...((((.....))))......--..)))))))((((.....))))))))))... ( -16.30) >DroYak_CAF1 2878 91 + 1 UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA ..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... ( -16.30) >consensus UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA ..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... (-16.30 = -16.30 + 0.00)
Location | 11,081,166 – 11,081,257 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 99.12 |
Mean single sequence MFE | -16.84 |
Consensus MFE | -16.88 |
Energy contribution | -16.88 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 1.00 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11081166 91 - 20766785 UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA ..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. ( -17.00) >DroSec_CAF1 3986 91 - 1 UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA ..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. ( -17.00) >DroSim_CAF1 1813 91 - 1 UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA ..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. ( -17.00) >DroEre_CAF1 3931 89 - 1 UUUUGCAACAUGUUUUACACACACACUCAGA--GAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA ..........(((..(((((.....(((...--...)))...((((((.((((((.....)))))).))))))......)))))..))).. ( -16.20) >DroYak_CAF1 2878 91 - 1 UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA ..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. ( -17.00) >consensus UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA ..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. (-16.88 = -16.88 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:55 2006