Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,074,451 – 11,074,559 |
Length | 108 |
Max. P | 0.770029 |
Location | 11,074,451 – 11,074,559 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.03 |
Mean single sequence MFE | -34.41 |
Consensus MFE | -29.86 |
Energy contribution | -29.98 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -1.53 |
Structure conservation index | 0.87 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11074451 108 + 20766785 GUCGAAU------------AUACCGCCGUAUUUGGUGUUCUUCUUCCUGGCCUUCAUUUCCUGUGCGGUCACCUUCUGCUGCCUGAGAUUCUGCAUUUGGGUGUGCUUCGAGGCCAGGGA ...(((.------------((((((.......))))))..)))((((((((((((((.(((.((((((.....(((........)))...))))))..))).)))....))))))))))) ( -35.50) >DroSec_CAF1 21423 108 + 1 GUCGAAU------------AUACCGCCCUACUUGGUGUUCUUCUUCCUGGCCUUCAUUUCCUGUGCGGUCACCUUCUGCUGCCUGAGAUUCUGCAUUUGGGUGUGCUUCGAGGCCAGGGA ...(((.------------((((((.......))))))..)))((((((((((((((.(((.((((((.....(((........)))...))))))..))).)))....))))))))))) ( -35.50) >DroSim_CAF1 20957 108 + 1 GUCGAAU------------AUACCGCCCUACUUGGUGUUCUUCUUCCUGGCCUUCAUUUCCUGUGCGGUCACCUUCUGCUGCCUGAGAUUCUGCAUUUGGGUGUGCUUCGAGGCCAGGGA ...(((.------------((((((.......))))))..)))((((((((((((((.(((.((((((.....(((........)))...))))))..))).)))....))))))))))) ( -35.50) >DroYak_CAF1 21711 108 + 1 GUCGAAU------------GUGCCACCCUACUUGGUGUUCUUCUUCCUGGCCUUCAUCUCGUGUGCCCUCACCUUCUGCUGCCUGAGAUUUUGCAUUUGGGUGUGCUGCGAGGCCAGGGA ...(((.------------(..(((.......)))..)..)))(((((((((......(((((.((...(((((..(((.............)))...))))).)))))))))))))))) ( -33.92) >DroAna_CAF1 22889 120 + 1 CUCGAAUAUGUCUUCCCACAUACCGCCCUAUGUGGUGUUCUUCUUUCUGGCCUUCAUCUCCUGUGCGAUUACCUUCUGCUGCCUGAGAUUCUGCAUUUGGAUCUGUUUCGAGGCCAGACA ...(((((.......(((((((......)))))))))))).....(((((((((((..(((.((((((.....(((........)))..)).))))..)))..))....))))))))).. ( -31.61) >consensus GUCGAAU____________AUACCGCCCUACUUGGUGUUCUUCUUCCUGGCCUUCAUUUCCUGUGCGGUCACCUUCUGCUGCCUGAGAUUCUGCAUUUGGGUGUGCUUCGAGGCCAGGGA .......................((((......))))......(((((((((((.(((((..((((((.......)))).))..)))))...((((......))))...))))))))))) (-29.86 = -29.98 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:53 2006