Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,068,917 – 11,069,008 |
Length | 91 |
Max. P | 0.574571 |
Location | 11,068,917 – 11,069,008 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 80.27 |
Mean single sequence MFE | -24.77 |
Consensus MFE | -17.44 |
Energy contribution | -17.80 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -1.22 |
Structure conservation index | 0.70 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11068917 91 - 20766785 AUCCCC----------------AUU------UCCAAUUGUUGUUCCUUUGUUGCCACUUGUUGCCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC--GAAGGCAUUGCAAUUGA ......----------------...------..(((((((.((.((((((((((((.((..((((.......))))..)).)))))........))--))))).)).))))))). ( -26.10) >DroSec_CAF1 15734 91 - 1 AUACCC----------------AUU------UCCAAUUGUUGUUCCUUUGUUGCCACUUGUUGCCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC--GAAGGCAUUGCAAUUGA ......----------------...------..(((((((.((.((((((((((((.((..((((.......))))..)).)))))........))--))))).)).))))))). ( -26.10) >DroSim_CAF1 15085 91 - 1 AUCCCC----------------AUU------UCCAAUUGUUGUUCCUUUGUUGCCACUUGUUGCCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC--GAAGGCAUUGCAAUUGA ......----------------...------..(((((((.((.((((((((((((.((..((((.......))))..)).)))))........))--))))).)).))))))). ( -26.10) >DroEre_CAF1 15822 90 - 1 AUCGUC----------------UUU------UACAAUGGUUGUUCCUUUGUUGCCACUUGAUGUCUG-GGUUGGCGUGGAUUGGUAAUUUGUUAGC--GGAGGCAUUGCAAUUGA ......----------------...------..((((.((.((.((((((((((((.((.(((((..-....))))).)).)))))........))--))))).)).)).)))). ( -23.40) >DroYak_CAF1 15922 97 - 1 UUUGUA----------------UUUUAGAUUUACAAUGGUGGUUCCUUUGUUGCCACUUGAUGGCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC--GGAGGCAUUGCAAUUGA ......----------------...........((((.(..((.((((((((((((.((.(((.(.......).))).)).)))))........))--))))).))..).)))). ( -24.10) >DroAna_CAF1 15938 109 - 1 AUUCACACAAGUACAAGUAAUCUUG------UCCAUUUCAAUUUUCUUUGUUGGCACUUGAUGUUUGAGGUUGGCGUGGAUUGGUAAUUUGUAAGACGGGGGCCAGUGCAAUUGA ...........(((((((.(((..(------(((((.((((((((...(((..(...)..)))...)))))))).)))))).))).)))))))...(((..((....))..))). ( -22.80) >consensus AUCCCC________________AUU______UCCAAUUGUUGUUCCUUUGUUGCCACUUGAUGCCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC__GAAGGCAUUGCAAUUGA .................................(((((((.((.((((((((((((.((..((((.......))))..)).)))))))..........))))).)).))))))). (-17.44 = -17.80 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:52 2006