Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,066,492 – 11,066,596 |
Length | 104 |
Max. P | 0.818797 |
Location | 11,066,492 – 11,066,596 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 98.72 |
Mean single sequence MFE | -16.07 |
Consensus MFE | -16.00 |
Energy contribution | -16.33 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 1.00 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11066492 104 - 20766785 AUUCUUUAUCAAAAUCGAAAUGUAAUAUCUAUAUAAACGCAUUAAAUACCAAUCAAUCAUCAGCUUAAAUGAUUGAACUACCACCUGUGGAAGUGAUAUUUCUC ................(((((((.............................((((((((........))))))))(((.(((....))).))).))))))).. ( -17.50) >DroSec_CAF1 13263 104 - 1 AUUCUUUAUCAAAAUCGAAAUGUAAUAUCUAUAUAAACGCAUUAAAUACCAAUCAAUCAUCAGCUUAAAUGAUUGAACUACCACCUGUGGAAGUGAUAUUUCUC ................(((((((.............................((((((((........))))))))(((.(((....))).))).))))))).. ( -17.50) >DroSim_CAF1 12608 104 - 1 AUUCUUUAUCGAAAUCGAAAUGUAAUAUCUAUAUAAACGCAUUAAAUACCAAUCAAUCAUCAGCUUAAAUGUUUGAACUACCACCUGUGGAAGUGAUAUUUCUC ........(((....)))...(.((((((.......................((((.(((........))).))))(((.(((....))).))))))))).).. ( -13.20) >consensus AUUCUUUAUCAAAAUCGAAAUGUAAUAUCUAUAUAAACGCAUUAAAUACCAAUCAAUCAUCAGCUUAAAUGAUUGAACUACCACCUGUGGAAGUGAUAUUUCUC ................(((((((.............................((((((((........))))))))(((.(((....))).))).))))))).. (-16.00 = -16.33 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:51 2006