Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,059,513 – 11,059,621 |
Length | 108 |
Max. P | 0.697826 |
Location | 11,059,513 – 11,059,621 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -47.08 |
Consensus MFE | -35.89 |
Energy contribution | -35.88 |
Covariance contribution | -0.01 |
Combinations/Pair | 1.38 |
Mean z-score | -1.71 |
Structure conservation index | 0.76 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11059513 108 + 20766785 UCGGGCGUGCGGAAGACCUGCUGUUGCUGCUGCUGUAAGUGCUGCAGCUGGGGAGCGGCGGUGAAGAAUCGGUACGGCGCGGGCGUCACGGUCGGCGCCAACGUCUGU .(((((((((.((......(((((((((.((((((((.....))))))..)).)))))))))......)).))))(((((.(((......))).)))))...))))). ( -50.80) >DroPse_CAF1 6400 108 + 1 UCGGGCGUACGGAAGACCUGCUGAUGCUGCUGCUGCAGAUGUUGCAGCUGUGGGGCGGCAGUGAAAAAGCGGUACGGCGCCGGCGUUACAGUGGGCGCCAAUGUCUGG .(((((((((.(....(((((((.(.(..(.(((((((...))))))).)..).))))))).)......).))))((((((.((......)).))))))...))))). ( -52.60) >DroWil_CAF1 7088 108 + 1 UCGGGCGUGCGGAAGACCUGCUGAUGUUGCUGUUGCAGAUGCUGCAAUUGGGGGGCGGCUGUGAAGAAGCGAUAUGGCGUCGGCGUUACGGUUGGCGCCACUGUCUGC .(((((..((((.....))))..((((((((.(..(((.((((.(......).)))).)))..)...))))))))(((((((((......)))))))))...))))). ( -45.40) >DroMoj_CAF1 7000 99 + 1 UCUGGAGUACGAUAGACCUGCUGCUGCU------GCAGAUGCUGAAGC---GGCGAGGCAGUGAAGAAACGGUACGGCGCCGGUGUCACUGUGGGCGCCAAUGUCUGC ...(((((((....(.(((((((((...------((....))...)))---))).)))).((......)).))))((((((.(........).))))))....))).. ( -35.50) >DroAna_CAF1 6508 108 + 1 UCGGGCGUGCGGAAGACCUGUUGCUGCUGCUGUUGCAAGUGUUGCAGCUGGGGGGCGGCGGUGAAGAAACGAUACGGCGCCGGCGUCACGGUGGGCGCCAACGUUUGU .((((....(....).))))(..((((((((((((((.....)))))).....))))))))..)..(((((....((((((.((......)).))))))..))))).. ( -45.60) >DroPer_CAF1 6404 108 + 1 UCGGGCGUACGGAAGACCUGCUGAUGCUGCUGCUGCAGAUGUUGCAGCUGUGGGGCGGCAGUGAAAAAGCGGUACGGCGCCGGCGUUACAGUGGGCGCCAAUGUCUGG .(((((((((.(....(((((((.(.(..(.(((((((...))))))).)..).))))))).)......).))))((((((.((......)).))))))...))))). ( -52.60) >consensus UCGGGCGUACGGAAGACCUGCUGAUGCUGCUGCUGCAGAUGCUGCAGCUGGGGGGCGGCAGUGAAGAAGCGGUACGGCGCCGGCGUCACGGUGGGCGCCAAUGUCUGC .(((((((.(....).(((((((.(.((.(.(((((((...))))))).).)).))))))).)............((((((.((......)).)))))).))))))). (-35.89 = -35.88 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:49 2006