| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,058,475 – 11,058,566 |
| Length | 91 |
| Max. P | 0.528443 |
| Location | 11,058,475 – 11,058,566 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.83 |
| Mean single sequence MFE | -24.63 |
| Consensus MFE | -12.15 |
| Energy contribution | -12.52 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.49 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11058475 91 + 20766785 CCACAUCCGAAGUGGGCGUGGUCACCAAGAAUGAGGAUCAUGUUUUGCAUGUGAGU-------UACUACUUGGUAUUAACAGGUUACCUUUA-----GUACC-C .(((((.((((....((((((((..((....))..)))))))))))).)))))...-------........((((((((.(((...))))))-----)))))-. ( -25.90) >DroSec_CAF1 5295 99 + 1 CCACAUCUGAAGUGGGAGUGGUCACCAAGAAUGAGGAUCAUGUUUUGCAUGUGAGUAGAACAUUUCUACUUGGUAUUAACAGCUUAACUUUA-----GUAAUUU ......(((((((..((((.((.((((((....((((..(((((((((......))))))))))))).))))))....)).)))).))))))-----)...... ( -27.30) >DroSim_CAF1 4641 99 + 1 CCACAUCUGAAGUGGGAGUGGUCACCAAGAAUGAGGAUCAUGUUUUGCAUGUGAGUAGAACAUUACUACUUGGUAUUACGAGCUUAACAUUA-----GUAAUUC ((((.......))))..(((((.((((((....((....(((((((((......)))))))))..)).))))))))))).............-----....... ( -24.00) >DroEre_CAF1 5310 104 + 1 CCACAUCCGAAGUGGGCGUGGUCACCAAGAAUGAGGACCAUAUUUUGCAUGUGAGUAGACCUUUACUACUUGAUAUAAUCACAUUAACACAUAUAAGAUAAUUU ((((.......))))..((((((..((....))..))))))((((((.((((((((((.......)))))((((...))))......))))).))))))..... ( -24.80) >DroYak_CAF1 5312 94 + 1 CCACCUCUGAAGUGGGCGUGGUCACCAAGAAUGAGGACCAUGUUUUGCAUGUGAGUAGACCAUUACUACUUGGUAUUAU-----AAACACAA-----GUGGUUU ..........(((((((((((((..((....))..))))))))(((((......))))))))))((((((((((.....-----..)).)))-----))))).. ( -28.60) >DroAna_CAF1 5498 81 + 1 CAACCUCAGAAGUGGGUGUUGUAACCAAGAAUGAGGACCAUGUUUUGCAUGUGAGU-GACUUUUAUAAUUUA-GAGAAUCAU--------A------------- ...(((((....(((.........)))....))))).(((((.....)))).).((-((.((((........-)))).))))--------.------------- ( -17.20) >consensus CCACAUCUGAAGUGGGCGUGGUCACCAAGAAUGAGGACCAUGUUUUGCAUGUGAGUAGACCAUUACUACUUGGUAUUAUCAG_UUAACAUAA_____GUAAUUU ((((.......))))..((((((..((....))..))))))..........(((((((.......)))))))................................ (-12.15 = -12.52 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:48 2006