Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,054,641 – 11,054,731 |
Length | 90 |
Max. P | 0.767510 |
Location | 11,054,641 – 11,054,731 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 87.33 |
Mean single sequence MFE | -20.78 |
Consensus MFE | -16.76 |
Energy contribution | -17.40 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.23 |
Mean z-score | -2.38 |
Structure conservation index | 0.81 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11054641 90 - 20766785 UUCCUUUCCGGCUUUGAGUGCAGACACAAACAGUUGCACCUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU .........(((..(((((((((.(.......)))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -19.50) >DroSec_CAF1 1473 90 - 1 UUCCUUUCCGGCUUUGAGUGCAGACACAAACAGCUGCACUUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU .........(((..(((((((((.(.......)))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -21.90) >DroSim_CAF1 1169 90 - 1 UUCCUUUCCGGCUUUGAGUGCAGACACAAACAGCUGCACCUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU .........(((..(((((((((.(.......)))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -21.90) >DroEre_CAF1 1479 90 - 1 UUCUUUUCCGGCUUUGAGUGCAGACACAAACAACUGCACCUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU .........(((..(((((((((..........))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -21.30) >DroYak_CAF1 1475 90 - 1 UUCUUUUCCGGCUUUGAGUGCAGACACAAACAGCUGCACCUUCUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU .........(((..(((((((((.(.......)))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -21.90) >DroAna_CAF1 1661 87 - 1 CUCCU---CGGCUUUCAGAGAGGACAUGAACAGCUCAAGUUUUUCUUCGCCUAUUCCUUGCAGGUCUAUGCUGCCUGCUUUAAUCAACAU .....---.(((....((((((.((.(((.....))).))))))))..)))........((((((.......))))))............ ( -18.20) >consensus UUCCUUUCCGGCUUUGAGUGCAGACACAAACAGCUGCACCUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU .........(((..(((((((((..........))))))....)))..))).......(((.(((..((((.....))))..))).))). (-16.76 = -17.40 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:43 2006