| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,032,659 – 11,032,750 |
| Length | 91 |
| Max. P | 0.968956 |
| Location | 11,032,659 – 11,032,750 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 79.59 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -21.85 |
| Energy contribution | -20.42 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11032659 91 - 20766785 UAUAGCUGCGUCUAAGCAAUU--GAAGCUUCCUAAGAUUU-UCGUGUCUUGGAACUUACUCCCCGAUUAUGUUGCUUCGCACCGUCGCAGUUAA- ..((((((((.(...((....--(((((...(((((((..-....)))))))(((.((.((...)).)).))))))))))...).)))))))).- ( -24.50) >DroPse_CAF1 163329 95 - 1 UAAUGCUGCGUCGCUGUUGUCGCGAGGCAUCGUAAGUUGGAUCCCAUCUUUGAUCUUAGUCGCCGAUUAAGAAGCUUCGCACUGACGUAGUAAAU ...(((((((((((....)).(((((((.(((.(((.(((...))).))))))((((((((...)))))))).)))))))...)))))))))... ( -35.60) >DroSec_CAF1 155218 91 - 1 UAUAGCUGCGUCUAAGCAAUU--GAAGCAUCCUAAGAUUU-UCGUGUCUUGGAACUUACUCCCCGAUUAAGUCGCUUCGCACCGUCGCAGUUAA- ..((((((((.(...((....--(((((.(((.(((((..-....))))))))(((((.((...)).))))).)))))))...).)))))))).- ( -27.90) >DroEre_CAF1 152438 90 - 1 UAAACCUGCGUCUAAGCAAUU--GAAGCCUCCUAAGAUGG-UCGUAUCUUGGAACUUACUCCUCGAUUAAGUCGCUUCGCGCCGUCGCAGUU-A- .....(((((.(...((....--(((((...((((((((.-...)))))))).(((((.((...)).))))).)))))))...).)))))..-.- ( -23.90) >DroYak_CAF1 154457 91 - 1 UAGAGCUGCGUCUAAGCAAUU--GAAGCCUCCUAAGAUUG-UCGUAUCUUGGAACUUACUCCCCGAUUAAGUCGCUUCGCACCGUCGCAGUUAA- ...(((((((.(...((....--(((((...(((((((..-....))))))).(((((.((...)).))))).)))))))...).)))))))..- ( -25.30) >DroPer_CAF1 140358 95 - 1 UAAUGCUGCGUCGCUGAUAUCGCGAGGCAUCGUAAGAUGGAUCCCAUCUUUGAUCUUAGUCGCCGAUUAAGAAGCUUCGCACUGACGUAGUAAAU ...(((((((((...(....)(((((((.(((.(((((((...))))))))))((((((((...)))))))).)))))))...)))))))))... ( -39.50) >consensus UAAAGCUGCGUCUAAGCAAUU__GAAGCAUCCUAAGAUGG_UCGUAUCUUGGAACUUACUCCCCGAUUAAGUCGCUUCGCACCGUCGCAGUUAA_ ...(((((((.(...((......(((((.(((.(((((.......))))))))(((((.((...)).))))).)))))))...).)))))))... (-21.85 = -20.42 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:34 2006