Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,127,734 – 2,127,888 |
Length | 154 |
Max. P | 0.975445 |
Location | 2,127,734 – 2,127,854 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.58 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -22.24 |
Energy contribution | -22.24 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.95 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2127734 120 + 20766785 ACUUUUCCAUUACAGAAACUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUAAACUCGGCCG ......................(((((((((..((((((....).(((...(((((((.....))))))))))))))))))))..........((((........))))......)))). ( -22.80) >DroSec_CAF1 106405 120 + 1 ACUUUUCCAUUACAGAAACUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAACCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCG ......................(((((((((..((((((....).......(((((((.....)))))))...))))))))))......((..((((........))))....)))))). ( -22.60) >DroSim_CAF1 110358 120 + 1 ACUUUUCCAUUACAGAAACUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCG ......................(((((((((..((((((....).(((...(((((((.....))))))))))))))))))))......((..((((........))))....)))))). ( -23.30) >DroEre_CAF1 105125 120 + 1 ACUUUUCCAUUACAGAAAAUAUGGCUUCCAACUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCG ..(((((.......)))))...(((((((((((..((((....).(((...(((((((.....))))))))))))))))))))......((..((((........))))....)))))). ( -24.50) >DroYak_CAF1 107461 120 + 1 AAUUUGCCAUUACAGAAAAUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUCAACUCGGCCG ..((((......))))......(((((((((..((((((....).(((...(((((((.....))))))))))))))))))))......(((((...........))))).....)))). ( -23.80) >consensus ACUUUUCCAUUACAGAAACUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCG ......................(((((((((..((((((....).......(((((((.....)))))))...))))))))))......((..((((........))))....)))))). (-22.24 = -22.24 + 0.00)
Location | 2,127,774 – 2,127,888 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -22.62 |
Consensus MFE | -21.64 |
Energy contribution | -21.64 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.18 |
Structure conservation index | 0.96 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.551079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2127774 114 + 20766785 CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUAAACUCGGCCGAGUACCUAGGAUACUUAAUGAGUCUGCAGAUAGC ((((.((....(((((((.....)))))))....)).))))........................(((((.(((((...((((((....).)))))..))))).)))))..... ( -22.50) >DroSec_CAF1 106445 114 + 1 CAACAUGAACUUUGUUAAUCCACUUAACAACCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCGAGUACCUAGGAUACUUAAUGAGUCUGCAGAUAGC ((((.((....(((((((.....)))))))....)).))))........................((((..(((((...((((((....).)))))..)))))..))))..... ( -21.70) >DroSim_CAF1 110398 114 + 1 CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCGAGUACCUAGGAUACUUAAUGAGUCUGCAGAUAGC ((((.((....(((((((.....)))))))....)).))))........................((((..(((((...((((((....).)))))..)))))..))))..... ( -22.40) >DroEre_CAF1 105165 114 + 1 CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCGAGUACAUAGGAUACUUAAUGAGUCUGCAGAUAGC ((((.((....(((((((.....)))))))....)).))))(((((((((((((....))))...(((((.((((....)))).)))))....)))..)))))).......... ( -24.00) >DroYak_CAF1 107501 114 + 1 CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUCAACUCGGCCGAGUACCUUGGAUACUUAAUGAGUCUGCAGAUAGC ((((.((....(((((((.....)))))))....)).))))((((((..(((((...........))))).......(((((...)))))........)))))).......... ( -22.50) >consensus CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCGAGUACCUAGGAUACUUAAUGAGUCUGCAGAUAGC ((((.((....(((((((.....)))))))....)).))))(((((((((...((((........))))..((((....))))..........)))..)))))).......... (-21.64 = -21.64 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:31 2006