| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,004,657 – 11,004,749 |
| Length | 92 |
| Max. P | 0.827141 |
| Location | 11,004,657 – 11,004,749 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 82.27 |
| Mean single sequence MFE | -25.64 |
| Consensus MFE | -15.34 |
| Energy contribution | -16.37 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11004657 92 - 20766785 CUCUUGGCCUUUGGAGUUGCCUCAUCAUCAUCCUCCACCACCAGC------ACCACCACAUCGGUAAAGCCAAAAACCGC----AAAUCCAAAGGCUGAGUC ..((..(((((((((.((((.......................(.------.......)...((.....)).......))----)).)))))))))..)).. ( -25.20) >DroSec_CAF1 117153 92 - 1 CUCUUGGCCUUUGGAGUUGCCUCAUCAUCAUCCUCCACCACCAGC------ACCACCACCUCGGUGAAGCCAAAAAUCGC----UAAUCCAAAGGCUGAGUC ..((..(((((((((((((......................))))------..((((.....)))).(((........))----)..)))))))))..)).. ( -26.95) >DroSim_CAF1 119486 92 - 1 CUCUUGGCCUUUGGAGUUGCCUCAUCAUCAUCCUCCACCACCAGC------ACUACCACAUCGGUGAAGCCAAAAACUGC----UAAUCCAAAGGCUGAGUC ..((..(((((((((.......................((((...------...........)))).(((........))----)..)))))))))..)).. ( -25.54) >DroEre_CAF1 120396 89 - 1 CUCUUGGCCUUUGGAGUUGCCUCAUCA---UCGUCCACCACCAGC------ACGUCUACAUCGGUGAAGCCAAAAACCGA----UAAUCCAAAGCCUGAGUC (((..(((.((((((((((........---...........))))------........((((((..........)))))----)..))))))))).))).. ( -21.91) >DroYak_CAF1 122358 89 - 1 CUCUUGGCCUUUGGAGUUGCCUCAUCA---UCCUCCACCACCAGC------ACAACCACAUCGGUGAAGCCAAAGACCAA----UAAUCCAAAGGCUGAGUC ..((..(((((((((............---..((.((((......------...........)))).))...........----...)))))))))..)).. ( -24.52) >DroAna_CAF1 121445 101 - 1 CUGCUGGCCAUAGGAGUGGUGGCAGCUUCAUCCUCCACGACCAGCGCCACCACCACCACCACGGCGAAACCAAAGACCGAGGAAAAGUCCAAAG-UUGAGGU .(((((.......(.((((((((.(((...((......))..)))))))))))).......)))))..(((...(((...(((....)))...)-))..))) ( -29.74) >consensus CUCUUGGCCUUUGGAGUUGCCUCAUCAUCAUCCUCCACCACCAGC______ACCACCACAUCGGUGAAGCCAAAAACCGA____UAAUCCAAAGGCUGAGUC ..(((((((((((((((((......................)))).................((.....))................))))))))))))).. (-15.34 = -16.37 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:27 2006