Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,000,226 – 11,000,322 |
Length | 96 |
Max. P | 0.579053 |
Location | 11,000,226 – 11,000,322 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -21.24 |
Energy contribution | -22.93 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.22 |
Mean z-score | -1.15 |
Structure conservation index | 0.68 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11000226 96 + 20766785 CUGCGGUGGCCACUGGCUGACCUUGGCCCCAAUAAGGGGCUCGGUCCAGUCGCUGAUGCCCUCGAAUUGUCGCCUGAUCUGAUUGUAAAACUG--------UAA .(((((((((((.(((((((((..((((((.....)))))).))).)))))).))..)))..(((....))).................))))--------)). ( -32.60) >DroSec_CAF1 112499 96 + 1 CUGCGGUGGCCACUGGCUGACCUUGGCCCCAAUAAGGGGCUCGGUCCAGUCGCUGAUGCCCUCGAAUUGUCGCCUGAUCUGAUUGUAAAACUG--------UAA .(((((((((((.(((((((((..((((((.....)))))).))).)))))).))..)))..(((....))).................))))--------)). ( -32.60) >DroSim_CAF1 114880 96 + 1 CUGCGGUGGCCACUGGCUGACCUUGGCCUCAAUAAGGGGCUCGGUCCAGUCGCUUUUGCCCUCGAAUUGUCGACUGAUCUGAUUGUAAAACUG--------UAA .((((((((((...))))((((..((((((.....)))))).))))(((((((.((((....))))..).)))))).............))))--------)). ( -31.30) >DroEre_CAF1 115717 101 + 1 CUGCGGUGGCCACCGGCUAACCUUGGCCCCAAUGAGGGGCUCGGUCCAGUCGCUGAUACCCUCGAAAAGUUACCUGAUCUAAA---CAAACUGAUCUGAACGAA ....((.(((((..((....)).)))))))..((((((..(((((......)))))..))))))....(((....((((....---......))))..)))... ( -32.60) >DroYak_CAF1 117606 93 + 1 CUGCGGUGGCCACCGGCUGACCUUGGCCCCAAUAAGGGGCUCGGUCCAGUCGCUAAUGCCGCCGAAUUAUUGCCUGAUCUGAA---CAAAUUG--------UAA ...(((((((...(((((((((..((((((.....)))))).))).)))))).....)))))))...................---.......--------... ( -37.30) >DroAna_CAF1 116487 77 + 1 CUGUGGUGGCCACCGGCUAACCUUGGCCUAAAUAUAGGGGCCGAC-------CUGAGGCGAUCGA------GGCUGAUCUGA------AGUUG--------UAA ((..(((((((.(((((((....)))))........)))))).))-------)..))..(((((.------...)))))...------.....--------... ( -22.00) >consensus CUGCGGUGGCCACCGGCUGACCUUGGCCCCAAUAAGGGGCUCGGUCCAGUCGCUGAUGCCCUCGAAUUGUCGCCUGAUCUGAU___AAAACUG________UAA ...(((.(((((.(((((((((..((((((.....)))))).))).)))))).))..))).)))........................................ (-21.24 = -22.93 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:26 2006