Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,999,029 – 10,999,137 |
Length | 108 |
Max. P | 0.760314 |
Location | 10,999,029 – 10,999,137 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 90.90 |
Mean single sequence MFE | -35.66 |
Consensus MFE | -27.70 |
Energy contribution | -30.54 |
Covariance contribution | 2.84 |
Combinations/Pair | 1.03 |
Mean z-score | -1.74 |
Structure conservation index | 0.78 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10999029 108 + 20766785 CCCAAGGCCAACCG-----ACUCGGAAAUUGGGUUAAAGCCCCGUUGAUCCCCGUGAAUCUUUAAAGGCAGCGCAGCGAGGUACAAGUUUUGUGUCACGGGGAUUUUCGGGAA (((((..((.....-----....))...))))).......((((..(((((((((((..........((......))....((((.....)))))))))))))))..)))).. ( -39.10) >DroSec_CAF1 111288 107 + 1 CCCAAGGCCAACCG-----ACUCG-AAAUUGGGUUAAAGCCCCGUUGAUCCCCGUGAAUCUUUAAAGGCAGCGCAGCGAGAUACAAGUUUUAUGUCACGGGGAUUUUCGGGAA .....((....))(-----(((((-....)))))).....((((..(((((((((((..........((......))(((((....)))))...)))))))))))..)))).. ( -35.40) >DroSim_CAF1 113685 107 + 1 CCCAAGGCCAACCG-----ACUCG-AAAUUGGGUUAAAGCCCCGUUGAUCCCCGUGAAUCUUUAAAGGCAGCGCAGCGAGAUACAAGUUUUAUGUCACGGGGAUUUUCGGGAA .....((....))(-----(((((-....)))))).....((((..(((((((((((..........((......))(((((....)))))...)))))))))))..)))).. ( -35.40) >DroEre_CAF1 114460 108 + 1 GCCAAGGCCAACCG-----ACUCGGAAAUUGGGUUAAAGCCCCGUUGAUCCCCGUGAAUCUUUAAGGGCAUCGCAGCGAGAUACAAGUUUUGUGUCACGGGGAUUUUCGGGAA .((((..((.....-----....))...))))........((((..(((((((((((..........((...)).(((((((....))))))).)))))))))))..)))).. ( -38.50) >DroYak_CAF1 116358 103 + 1 CCCAAGGCCAACCGAACAGACUCGGAAAUUGGGUUAAAGCCCCGUUGAUCCCCGUGUAUCUUUAAAGGCAGCGCAGCGAGAUACAUGUUUUGUA----------UUUCGGGAA (((...(((..((((......)))).(((.((((....)))).)))....................)))........((((((((.....))))----------))))))).. ( -29.90) >consensus CCCAAGGCCAACCG_____ACUCGGAAAUUGGGUUAAAGCCCCGUUGAUCCCCGUGAAUCUUUAAAGGCAGCGCAGCGAGAUACAAGUUUUGUGUCACGGGGAUUUUCGGGAA (((((......(((........)))...))))).......((((..(((((((((((..........((...)).(((((((....))))))).)))))))))))..)))).. (-27.70 = -30.54 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:23 2006