Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,996,587 – 10,996,693 |
Length | 106 |
Max. P | 0.686955 |
Location | 10,996,587 – 10,996,693 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.77 |
Mean single sequence MFE | -18.69 |
Consensus MFE | -1.89 |
Energy contribution | -3.27 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.11 |
Mean z-score | -1.52 |
Structure conservation index | 0.10 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10996587 106 + 20766785 GCUAAUAUUACCUUAAUAAAAUUAAGGUAAUAAUGUCCC-AGUCCAUGCUAUAAUCCAUAAUUUCUAGGAAAUCCGAUUAUGUCCAUUUACUUCUUAU----AGAA---------UACCA .(((.((((((((((((...)))))))))))).......-(((..(((.(((((((....(((((...)))))..)))))))..)))..))).....)----))..---------..... ( -17.40) >DroSec_CAF1 108881 113 + 1 GGUAAUA---AGUUAGUAUAAUUAAGGAAAUAAUGUCCC-AUUUCAUGCUAUAAUCAAUCAUUACUAGGAAAUCCGAUUAUGUCCAUGUAAUUCUUAUGAAUAGUA-ACCUAU--UACCC (((((((---.((((.(((...((((((...((((...)-))).((((.(((((((.(....)....((....)))))))))..))))...))))))...))).))-)).)))--)))). ( -21.80) >DroSim_CAF1 111280 116 + 1 GGUAAUA---AGUUAAUAGAAUUAAGGAAAUAAUGUCCC-AUUUCAUGCUAUAAUCAAUCAUUACUAGGAAAUCCGAUAAUGUCCAUGUAAUUCUUAUGAAUAGAAUACCUAUUUUACCC ((((...---.......(((((((.(((.....((((..-(((((...(((((((.....)))).))))))))..))))...)))...)))))))...((((((.....)))))))))). ( -17.40) >DroEre_CAF1 112105 104 + 1 GGU--------------AGAAUUAAGGUAAUAAUCUUCCAAUUUCAUGCUAUGAUUAUUCAUUGCUAAGAAAUUCGAUAACUUCCAUGUACUUCCUAUGAAUAGAAUACCUAU--UACCU (((--------------((.....(((((.......((.((((((..((.((((....)))).))...)))))).)).......((((.......)))).......))))).)--)))). ( -17.70) >DroYak_CAF1 113952 113 + 1 GGUAAUA-----UGAACAGAAUUAAAGUAAAAAUGUUCCAAUUUCAUGUCAUGAUCAAUAGUUUCUAAGAAAUUCGAUCAUAGCCAUGUACUUCCUAUGAAUAGAAUACCUAU--UACCC (((((((-----.(((((...............)))))......((((.(((((((...((((((...)))))).)))))).).))))......................)))--)))). ( -19.16) >consensus GGUAAUA_____UUAAUAGAAUUAAGGUAAUAAUGUCCC_AUUUCAUGCUAUAAUCAAUCAUUACUAGGAAAUCCGAUAAUGUCCAUGUACUUCUUAUGAAUAGAAUACCUAU__UACCC ((((........................................((((..((((((...................))))))...))))............((((.....))))..)))). ( -1.89 = -3.27 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:22 2006