Locus 3219

Sequence ID 2R_DroMel_CAF1
Location 10,995,554 – 10,995,658
Length 104
Max. P 0.772291
window5292

overview

Window 2

Location 10,995,554 – 10,995,658
Length 104
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 75.49
Mean single sequence MFE -25.55
Consensus MFE -12.46
Energy contribution -14.30
Covariance contribution 1.84
Combinations/Pair 1.17
Mean z-score -1.95
Structure conservation index 0.49
SVM decision value 0.53
SVM RNA-class probability 0.772291
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10995554 104 - 20766785
ACCCAGCCAGGGCCAGUGUUCCAUUGACCUCUUCAACUGGAAAGUUUGCAUCAGUGCGAAACUGGA------UCAGCUGAAA--UGG--GAUCUA--AGAUCAAACAUAUAAACAU
...((((..(..(((((.(((((((((.....)))).)))))..((((((....))))))))))).------.).))))..(--((.--((((..--.))))...)))........ ( -27.90)
>DroSec_CAF1 107831 104 - 1
ACCCAGCCAGGGCCAGUGUUCCAUUGACCUCUUCAAAUGGAAAGUUUGCAUCAGUGCGAAACUGGA------UGAACUGAAA--UGG--GAUCUA--AGAUCAAACAUACAUAUCU
.((((..(((..(((((.(((((((((.....)).)))))))..((((((....))))))))))).------....)))...--)))--).....--................... ( -27.80)
>DroSim_CAF1 110243 102 - 1
ACCCAGCCAGGGCCAGUGUUCCAUUGACCUCUUCAAAUGGAAAGUUUGCAUCAGUGCGAAACUGGA------UCAACUGAAAACUGG--GAUCUA--AGAUCAAACAUA----UAU
.(((((.(((..(((((.(((((((((.....)).)))))))..((((((....))))))))))).------....)))....))))--).....--............----... ( -28.50)
>DroEre_CAF1 111061 97 - 1
UCCCAGCCAGGGCCAGUGUUCCAUUGACCUCUUCAAAUGGAAAGUUUGCAUCUAUGCAAAACUGGA------UCAACUGAAA--UGG--GAAAUA--GGAUCAAAGAUU-------
(((((..(((..(((((.(((((((((.....)).)))))))..((((((....))))))))))).------....)))...--)))--))....--............------- ( -28.90)
>DroYak_CAF1 112922 97 - 1
UCCCAGCCAGGGCCAGUGUUCCAUUGACCUCUUCAGAUGGAAAGUUUGCAUCAGUGCGAAACUAGA------UCAACUAAAA--UGG--GAACUA--AGAUCAAAGAUA-------
(((((((....)).(((.(((((((((.....))).))))))((((((((....))).)))))...------...)))....--)))--))....--............------- ( -21.70)
>DroAna_CAF1 111536 101 - 1
ACCCGUCGAGGGCCAGUGUUCCAUUGACAUUUAAGUCUAAAAAACUUCA---AGUACCAAUUUAAACACUUUUUUGUUGAAA--UUUGAAAUCCAGAACAUGAAAC----------
.(((.....)))...((((((....(((......)))........((((---(((..((((..(((....)))..))))..)--)))))).....)))))).....---------- ( -18.50)
>consensus
ACCCAGCCAGGGCCAGUGUUCCAUUGACCUCUUCAAAUGGAAAGUUUGCAUCAGUGCGAAACUGGA______UCAACUGAAA__UGG__GAUCUA__AGAUCAAACAUA_______
.(((.....)))(((((.(((((((((.....)))).)))))..((((((....)))))))))))................................................... (-12.46 = -14.30 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:20 2006