Locus 3217

Sequence ID 2R_DroMel_CAF1
Location 10,984,043 – 10,984,133
Length 90
Max. P 0.557501
window5290

overview

Window 0

Location 10,984,043 – 10,984,133
Length 90
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 78.49
Mean single sequence MFE -36.18
Consensus MFE -20.32
Energy contribution -20.05
Covariance contribution -0.27
Combinations/Pair 1.45
Mean z-score -1.67
Structure conservation index 0.56
SVM decision value 0.05
SVM RNA-class probability 0.557501
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10984043 90 + 20766785
GGCUAAAGAUCUCGCCUCUGCUGAGCUACGAGGAUUACGGCGGAGGUG--------GAGGUGGCGAGAAGGCGCACCACAGACUGACUAGCACGGCAA
.((((.((.((((((((((((((..((....))....)))))))))))--------..((((((......)).))))..)))))...))))....... ( -33.00)
>DroVir_CAF1 124056 84 + 1
GGCUCAAGAUCUCGCCGCUGCUGGCGUACGAUGAGUAUGGCGGCGGUG--------------GCGACAAGUCGCACCACAGGCUGACCAGCACGGCGC
.......(((.((((((((((((.(((((.....))))).))))))))--------------))))...)))((.((....(((....)))..)).)) ( -39.00)
>DroSim_CAF1 98668 90 + 1
GGCUAAAGAUCUCGCCUCUGCUGAGCUACGAGGACUACGGCGGAGGUG--------GAGGUGGCGAGAAGGCGCACCACAGACUGAGUAGCACGGCAA
.((((.((.((((((((((((((((((....)).)).)))))))))))--------..((((((......)).))))..)))))...))))....... ( -36.30)
>DroEre_CAF1 99070 96 + 1
GCCUGAAGAUCUCGCCUCUGCUGAGCUACGAGGAUUACGGCGGAGGUGGAGGUG--GAGGUGGCGAGAAGGCCCACCACAGACUGAGUAGCACGGCAC
(((((....((((((((((((((..((....))....))))))))))))..(((--(..(.(((......)))).)))).....))....)).))).. ( -36.70)
>DroYak_CAF1 100692 84 + 1
GCCUGAAGAUCUCGCCACUGUUGAGCUACGAGGAUUACGGCGGAG--------------GUGGCGAGAAAGCUCACCACAGACUGAGUAGCACGGCAA
(((((....((((((((((.....(((...........)))...)--------------)))))))))..(((((........)))))..)).))).. ( -30.10)
>DroMoj_CAF1 141656 93 + 1
GCCUGAAGAUCUCGCCGUUGCUGGCCUACGAUGAGUACGGCGGCGGCGGGA---UC--GGGGGAGAUAAGUCACAUCAGAGGCUGACCAGCACGGCGC
(((((..((((((((((((((((..((......))..))))))))))))))---))--..((......((((........))))..))..)).))).. ( -42.00)
>consensus
GCCUGAAGAUCUCGCCUCUGCUGAGCUACGAGGAUUACGGCGGAGGUG__________GGUGGCGAGAAGGCGCACCACAGACUGACUAGCACGGCAA
(.(((.((.(((((((((((((((((......).)).)))))))))))..........((((((......)).))))..)))))...))))....... (-20.32 = -20.05 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:18 2006