Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,977,165 – 10,977,270 |
Length | 105 |
Max. P | 0.810604 |
Location | 10,977,165 – 10,977,270 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 89.40 |
Mean single sequence MFE | -32.06 |
Consensus MFE | -22.32 |
Energy contribution | -21.84 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.16 |
Mean z-score | -2.60 |
Structure conservation index | 0.70 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10977165 105 - 20766785 UAGUCCUGCACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAACGGGAAUACAGUGCAAAAAAAAAAUCGAGUAACAAAGAGCGCUAAUGCUU ......(((((((..(((((.((.......)).)))))........(((((....)))))...))))))).....................(((((....))))) ( -35.50) >DroSec_CAF1 89480 103 - 1 UAGUCCUGCACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAACGGGCAUACAGUG--AAAAUAAAAUCAAGUAACAAAGAGCGCUAAUGUUU ...(((......)))(((((.((.......)).)))))((((...(.((((....))))).(((..((--(........))).))).......))))........ ( -29.50) >DroSim_CAF1 91810 103 - 1 UAGUCCUGCACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAACGGGCAUACAGUG--AAAAUAAAAUCAAGUAACAACGAGCGCUAAUGUUU ...(((......)))(((((.((.......)).)))))((((...(.((((....))))).(((..((--(........))).))).......))))........ ( -29.50) >DroEre_CAF1 91956 102 - 1 UAGUCCUGGACUGGAGCUGCGGCACAAACAGUGGCAGUGUGCAAAGUCCCGGGAGCGG-GAUACAGUG--AAAAUAAAAUAGAGCAACCGGCAGCUCUAAUGCUC .((((...))))(((((((((.(((.....))).).(..(((...((((((....)))-)))...((.--...))........)))..).))))))))....... ( -34.60) >DroYak_CAF1 93524 103 - 1 UAGUCCUGAACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAGCGGGGAUACAGUG--CAAAAAAAAUAGAGUAACAAUCAGCUCUAAUGUCU ...(((......)))(((((.((.......)).))))).((((...(((((....)))))......))--)).......((((((........))))))...... ( -31.20) >consensus UAGUCCUGCACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAACGGGCAUACAGUG__AAAAUAAAAUCGAGUAACAAAGAGCGCUAAUGUUU .......((((((..(((((.((.......)).))))).........((((....))))....))))................((........))))........ (-22.32 = -21.84 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:16 2006