Locus 3215

Sequence ID 2R_DroMel_CAF1
Location 10,976,706 – 10,976,798
Length 92
Max. P 0.808408
window5288

overview

Window 8

Location 10,976,706 – 10,976,798
Length 92
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 87.74
Mean single sequence MFE -32.12
Consensus MFE -26.71
Energy contribution -26.52
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.83
SVM decision value 0.64
SVM RNA-class probability 0.808408
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10976706 92 + 20766785
CGCGCUGAAAGCAGCUCCAUCAGCCUUCAGCUCGGCUGGAGUCGAAUGG----AAACUUACUCCAUG----------------GUGAUGGGAUUUUUAUCCUCGUACACUUU
((.((((((.((..........)).)))))).))..((((((.....(.----...)..)))))).(----------------((((((((((....)))).))).)))).. ( -29.40)
>DroSec_CAF1 89045 96 + 1
CGCGCUGAAAGCAGCUCCAUCAGCCUUCAGCUCGGCUGGAGUCGAAUGGAAGGAAACUUACUCCAUG----------------GUGAUGGGAUUUUUAUCCUCGUACACUUU
...((((....))))(((((..(.(((((((...))))))).)..))))).(((.......)))..(----------------((((((((((....)))).))).)))).. ( -31.20)
>DroSim_CAF1 91365 96 + 1
CGCGCUGAAAGCAGCUCCAUCAGCCUUCAGCUCGGCUGGAGUCGAAUGGAAGGAAACUUACUCCAUG----------------GUGAUGGGAUUUUUAUCCUCGUACACUUU
...((((....))))(((((..(.(((((((...))))))).)..))))).(((.......)))..(----------------((((((((((....)))).))).)))).. ( -31.20)
>DroYak_CAF1 93115 108 + 1
CGCGCUGAAAGCAGCUCCAUCAGUCUUCAGCUCGGCUGGAGUCGAAUGG----AAACUUACUCCAUGGGAUGGGUUGGGAUGGGUGAUGGGAUUUUUAUCCUCAUACACUGA
...((((....))))(((((..(.(((((((...))))))).)..))))----)((((((..(....)..))))))......(((((((((((....)))).))).)))).. ( -36.70)
>consensus
CGCGCUGAAAGCAGCUCCAUCAGCCUUCAGCUCGGCUGGAGUCGAAUGG____AAACUUACUCCAUG________________GUGAUGGGAUUUUUAUCCUCGUACACUUU
...((((....)))).((((..(.(((((((...))))))).)..))))..................................((((((((((....)))).))).)))... (-26.71 = -26.52 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:15 2006