| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,974,900 – 10,974,997 |
| Length | 97 |
| Max. P | 0.990513 |
| Location | 10,974,900 – 10,974,997 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 95.77 |
| Mean single sequence MFE | -22.92 |
| Consensus MFE | -21.72 |
| Energy contribution | -21.40 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.990513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10974900 97 - 20766785 UUUGUUGAUUGUGUGCUGGCUGAGCUCGAAUCAGCAUGUAUUUGU------AUAUUUGCAUAGAGAAGGCUAGGGAAAUCAGGAUGUUUAAAGGAAAACAAAG ..(.((((((...(.((((((...(((......(((.((((....------)))).)))...)))..)))))).).)))))).)(((((......)))))... ( -23.10) >DroSec_CAF1 87271 97 - 1 UUUGUUGAUUGUGUGCUGGCUGAGCUCGAUUCAGCAUGUAUUUGU------AUAUUUGCAUAGAGAAGGCUAGGGAAAUCAGGAUGUUUAAAGGAAAACAAAG ..(.((((((...(.((((((...(((......(((.((((....------)))).)))...)))..)))))).).)))))).)(((((......)))))... ( -23.10) >DroSim_CAF1 89554 97 - 1 UUUGUUGAUUGUGUGCUGGCUGAGCUCGAUUCAGCAUGUAUUUGU------AUAUUUGCGUAGAGAAGGCUAGGGAAAUCAGGAUGUUUAAAGGAAAACAAAG ..(.((((((...(.((((((...(((......(((.((((....------)))).)))...)))..)))))).).)))))).)(((((......)))))... ( -24.20) >DroEre_CAF1 89615 96 - 1 U-UGUUGAUUGUGUGCUGGCUGAGCUCGAUUCAGCAUGUAUUUGU------AUAUUUGCAUAGAGAAGGCUAGGGAAAUUAGGAUGUUUAAAGGAAAACAAAG .-(.((((((...(.((((((...(((......(((.((((....------)))).)))...)))..)))))).).)))))).)(((((......)))))... ( -20.90) >DroYak_CAF1 91168 102 - 1 U-UGUUGAUUGUGUGCUGGCUGAGCUCGAUUCAGCAUGUAUUUGUAAAUAUAUAUUUGCAUAGAGAAGGCUAGGGAAAUCAGGAUGUUUAAAGGAAAACAAAG .-(.((((((...(.((((((...(((.((.(((.((((((........))))))))).)).)))..)))))).).)))))).)(((((......)))))... ( -23.30) >consensus UUUGUUGAUUGUGUGCUGGCUGAGCUCGAUUCAGCAUGUAUUUGU______AUAUUUGCAUAGAGAAGGCUAGGGAAAUCAGGAUGUUUAAAGGAAAACAAAG ..(.((((((...(.((((((...((((......)(((((..(((......)))..))))).)))..)))))).).)))))).)(((((......)))))... (-21.72 = -21.40 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:11 2006