Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,962,279 – 10,962,380 |
Length | 101 |
Max. P | 0.942306 |
Location | 10,962,279 – 10,962,380 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 95.84 |
Mean single sequence MFE | -24.24 |
Consensus MFE | -22.17 |
Energy contribution | -22.06 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.26 |
Structure conservation index | 0.91 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10962279 101 + 20766785 UUGGCAAGGUCAGAGUGGUGAUUCAUUUUGCACAUUCC-----GCAUGCAAAUUGAAUUAAAGCAAUCUUAAUUACAUCGGAGUGAAUUAAGCUGUGCUCAGGAAA ((((((....(((.((..(((((((.((((((......-----...)))))).)))))))..))...(((((((.(((....)))))))))))))))).))).... ( -23.80) >DroSec_CAF1 74617 101 + 1 UUGGCAAGGUCAGAGUGGUGAUUCAUUUUGCACAUUCC-----GCAUGCAAAUUGAAUUAAAGCAAUCUUAAUUACAUCGGAGUGAAUUAAGCUGUGCUCAGGAAA ((((((....(((.((..(((((((.((((((......-----...)))))).)))))))..))...(((((((.(((....)))))))))))))))).))).... ( -23.80) >DroSim_CAF1 76908 101 + 1 UUGGCAAGGUCAGAGUGGUGAUUCAUUUUGCACAUUCC-----GCAUGCAAAUUGAAUUAAAGCAAUCUUAAUUACAUCGGAGUGAAUUAAGCUGUGCUCAGGAAA ((((((....(((.((..(((((((.((((((......-----...)))))).)))))))..))...(((((((.(((....)))))))))))))))).))).... ( -23.80) >DroEre_CAF1 76951 101 + 1 UUGGCAAGGUCAGAGUGGUGAUUCAUUUUGCACAUUCC-----GCAUGCAAAUUGAAUUAAAGCAAUCUUAAUUACAUCGAAGUGAAUUAAGCUGUGCUCAGGAAA ((((((....(((.((..(((((((.((((((......-----...)))))).)))))))..))...(((((((.(((....)))))))))))))))).))).... ( -23.80) >DroYak_CAF1 78074 101 + 1 UUGGCAAGGUCAGAGUGGUGAUUCAUUUUGCACAUUCC-----GCAUGCAAAUUGAAUUAAAGCAAUCUUAAUUACAUCGAAGUGAAUUAAGCUGUGCUCAGGAAA ((((((....(((.((..(((((((.((((((......-----...)))))).)))))))..))...(((((((.(((....)))))))))))))))).))).... ( -23.80) >DroAna_CAF1 75029 106 + 1 UUGGCAAGGUCAGAUCGGUGAUUCAUUUUGCACAUUCCAUUCAGCAUGCAAAUUGAAUUAAAGCAAUCUUAAUUACAUCGAAGUGAAUUGAGCUGUGCUCCGAAAG (((((...))))).(((((((((((.((((((..............)))))).))))))).((((..(((((((.(((....))))))))))...))))))))... ( -26.44) >consensus UUGGCAAGGUCAGAGUGGUGAUUCAUUUUGCACAUUCC_____GCAUGCAAAUUGAAUUAAAGCAAUCUUAAUUACAUCGAAGUGAAUUAAGCUGUGCUCAGGAAA ..((((....(((.((..(((((((.((((((..............)))))).)))))))..))...(((((((.(((....)))))))))))))))))....... (-22.17 = -22.06 + -0.11)
Location | 10,962,279 – 10,962,380 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 95.84 |
Mean single sequence MFE | -20.71 |
Consensus MFE | -19.30 |
Energy contribution | -19.47 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.93 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10962279 101 - 20766785 UUUCCUGAGCACAGCUUAAUUCACUCCGAUGUAAUUAAGAUUGCUUUAAUUCAAUUUGCAUGC-----GGAAUGUGCAAAAUGAAUCACCACUCUGACCUUGCCAA ......(((((...(((((((.((......)))))))))..)))))..(((((.(((((((..-----.....))))))).))))).................... ( -20.60) >DroSec_CAF1 74617 101 - 1 UUUCCUGAGCACAGCUUAAUUCACUCCGAUGUAAUUAAGAUUGCUUUAAUUCAAUUUGCAUGC-----GGAAUGUGCAAAAUGAAUCACCACUCUGACCUUGCCAA ......(((((...(((((((.((......)))))))))..)))))..(((((.(((((((..-----.....))))))).))))).................... ( -20.60) >DroSim_CAF1 76908 101 - 1 UUUCCUGAGCACAGCUUAAUUCACUCCGAUGUAAUUAAGAUUGCUUUAAUUCAAUUUGCAUGC-----GGAAUGUGCAAAAUGAAUCACCACUCUGACCUUGCCAA ......(((((...(((((((.((......)))))))))..)))))..(((((.(((((((..-----.....))))))).))))).................... ( -20.60) >DroEre_CAF1 76951 101 - 1 UUUCCUGAGCACAGCUUAAUUCACUUCGAUGUAAUUAAGAUUGCUUUAAUUCAAUUUGCAUGC-----GGAAUGUGCAAAAUGAAUCACCACUCUGACCUUGCCAA ......(((((...(((((((.((......)))))))))..)))))..(((((.(((((((..-----.....))))))).))))).................... ( -20.60) >DroYak_CAF1 78074 101 - 1 UUUCCUGAGCACAGCUUAAUUCACUUCGAUGUAAUUAAGAUUGCUUUAAUUCAAUUUGCAUGC-----GGAAUGUGCAAAAUGAAUCACCACUCUGACCUUGCCAA ......(((((...(((((((.((......)))))))))..)))))..(((((.(((((((..-----.....))))))).))))).................... ( -20.60) >DroAna_CAF1 75029 106 - 1 CUUUCGGAGCACAGCUCAAUUCACUUCGAUGUAAUUAAGAUUGCUUUAAUUCAAUUUGCAUGCUGAAUGGAAUGUGCAAAAUGAAUCACCGAUCUGACCUUGCCAA ...((((((..............)))))).((((...((((((.....(((((.(((((((.((....))...))))))).)))))...))))))....))))... ( -21.24) >consensus UUUCCUGAGCACAGCUUAAUUCACUCCGAUGUAAUUAAGAUUGCUUUAAUUCAAUUUGCAUGC_____GGAAUGUGCAAAAUGAAUCACCACUCUGACCUUGCCAA ......(((((...(((((((.((......)))))))))..)))))..(((((.(((((((............))))))).))))).................... (-19.30 = -19.47 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:09 2006