Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,961,783 – 10,961,879 |
Length | 96 |
Max. P | 0.581004 |
Location | 10,961,783 – 10,961,879 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 74.90 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -7.63 |
Energy contribution | -9.05 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.18 |
Mean z-score | -2.35 |
Structure conservation index | 0.29 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.581004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10961783 96 - 20766785 UGCAUACUCGU---ACA----------UGUAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCAGUGAGGGC-CCACAUUGGCUGCUAUCUACUUAAUU (((((((((((---(((----------(((......))))))))))))))....((((((.....)))))).)))((((.(((-(......))))....)).))...... ( -29.50) >DroSec_CAF1 74128 96 - 1 UGCAUACUCGU---ACA----------UGUAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCAGUGAGGGC-CCACAUUGGCUGCUAUCUACUUAAUU (((((((((((---(((----------(((......))))))))))))))....((((((.....)))))).)))((((.(((-(......))))....)).))...... ( -29.50) >DroSim_CAF1 76414 96 - 1 UGCAUACUCGU---ACA----------UGUAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCAGUGAGGGC-CCACAUUGGCUGCUAUCUACUUAAUU (((((((((((---(((----------(((......))))))))))))))....((((((.....)))))).)))((((.(((-(......))))....)).))...... ( -29.50) >DroEre_CAF1 76443 101 - 1 UGCAUACCCGU---ACAUGU------GUGCAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCACUGAGGGCCCCACAUUGGCUGCUAUCUACUUAAUU (((((((((((---((((((------.((....)).))))))))))))))....((((((.....)))))).)))..((.(((.((.....))..))).))......... ( -34.10) >DroAna_CAF1 74387 100 - 1 UUAAUAUCCUC---CCAUUUCUCACCGUGUAUGCAUAUG------AGUAUAUUAUAUACAUAUCACGUAUACGCAGUGUUGGC-UCACAUUGGCUGCUAUCUACUUAAUU ...........---...........((((((((.(((((------(.....)))))).)))).)))).....(((((..((..-...))...)))))............. ( -18.20) >DroPer_CAF1 69545 78 - 1 CACACACUCUUUUGACA----------UGCAUAGAUAUGAAUACAUGUG-----UG-------CACGUUUACG---------U-GUACAUUGGCUGCUAUCUGCUUAAUU .................----------....((((((.(....((.(((-----((-------((((....))---------)-))))))))....)))))))....... ( -17.50) >consensus UGCAUACUCGU___ACA__________UGUAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCAGUGAGGGC_CCACAUUGGCUGCUAUCUACUUAAUU ............................(((.((.((((((.............((((((.....))))))..............)))))).)))))............. ( -7.63 = -9.05 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:07 2006