Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,959,214 – 10,959,334 |
Length | 120 |
Max. P | 0.530449 |
Location | 10,959,214 – 10,959,334 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.38 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -5.56 |
Energy contribution | -6.04 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.25 |
Mean z-score | -1.83 |
Structure conservation index | 0.26 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10959214 120 - 20766785 UAAGUAUCUCUCAUCCAACAAUAAACUGUAUUCCCGACGAAUAUGGUUGCGAAAUGCCAUAAAGCUGCAACAAUUUGCAUUAUUUAAAACAUAUUAAAUAGCGCAUUAAUUACCGAGAAU ........((((...........((((((((((.....))))))))))....(((((........(((((....)))))((((((((......)))))))).))))).......)))).. ( -22.50) >DroSec_CAF1 71596 120 - 1 UAAGUAUCUCUCAUACAACAAUAAACUGUAUUCACGGCGAAAAUGGCUGCGAAAUGCCAUAAAGCUGCAACAAUUUGCAUUAUUAAAAUCAUUUUAAAUAGAGCUUUAAUUACCGAGAAU ........(((((((((.........)))))....((..(...((((........))))(((((((((((....)))).(((((.(((....))).)))))))))))).)..)))))).. ( -23.30) >DroSim_CAF1 73885 108 - 1 UAAGUAUCUCUCAUACAACAAUAAA------------CGAAAAUGGCUGCGAAAUGCCAUAAAGCUGCAACAAUUUGCAUUAUUUAAAUCAUAUUAAAUAGCGCUUUAAUUACCGAGAAU ........((((.............------------......((((........))))(((((((((((....)))))((((((((......)))))))).))))))......)))).. ( -21.90) >DroEre_CAF1 73913 100 - 1 GGAGUAUCUUUUAUCCAGCAUUGAGCUGUUUUCCCUACGAAAAUGGU------GUGCCAU-------------UUUG-GAUAUACGAAUGACAUUUAAUAGCGCGUUAAAUUGUGAUAAU ......((...((((((((((...(((((((((.....)))))))))------))))...-------------..))-))))...))((.(((((((((.....)))))).))).))... ( -19.20) >DroYak_CAF1 74906 104 - 1 AGGGUAUCUCUCAUCCGACAAUCAACUGUACUCUCAGCGAAAAUGGUUGCAAAAUGCCAU-------------UUUU-GUUAUUUGAAUGA--UUUAUAAGCCCAUAUAAAUAUGAUAAU .(((((((..(((....(((......)))......((((((((((((........)))))-------------))))-)))...)))..))--)......))))................ ( -21.50) >consensus UAAGUAUCUCUCAUCCAACAAUAAACUGUAUUCCCGACGAAAAUGGUUGCGAAAUGCCAUAAAGCUGCAACAAUUUGCAUUAUUUAAAUCAUAUUAAAUAGCGCAUUAAUUACCGAGAAU ........((((.....(((......))).............(((((........)))))......................................................)))).. ( -5.56 = -6.04 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:02 2006