| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,957,387 – 10,957,502 |
| Length | 115 |
| Max. P | 0.999217 |
| Location | 10,957,387 – 10,957,502 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 95.30 |
| Mean single sequence MFE | -28.69 |
| Consensus MFE | -26.31 |
| Energy contribution | -26.67 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.92 |
| SVM decision value | 3.44 |
| SVM RNA-class probability | 0.999217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10957387 115 + 20766785 CUUUUGGCUUCGUUACGCUAACAAGCUGCAGCUGCAGCCCGAAAACACUUGGCGAACAAGUCCUAAAAUUUAGGAACUUCUUUCAAUUUACCAACGCACUUAAGGAGUUUCUACA .....(((((.(((.((((((...(((((....)))))..(....)..))))))))))))))........((((((((((((...................)))))))))))).. ( -29.81) >DroSec_CAF1 69798 115 + 1 CUUUUGGCUUCGUUACGCUAACAAGCUGCAGCUGCAGGCCGAAAACACUUGGCGAACAAGUCCUGAAAUUUAGAAACUUCUUUCAAUUUAGCAACGCACUUAAGGAGUUUCUACA .(((((((...((((...))))...((((....)))))))))))..(((((.....))))).........((((((((((((...................)))))))))))).. ( -29.21) >DroSim_CAF1 72113 115 + 1 CUUUUGGCUUCGUUACGCUAACAAGCUGCAGCUGCAGCCCGAAAACACUUGGCGAACAAGUCCUGAAAUUUAGAAACUUCUUUCAAUUUACCAACGCACUUAAGGAGUUUCCACA .....(((((.(((.((((((...(((((....)))))..(....)..))))))))))))))..........((((((((((...................)))))))))).... ( -27.71) >DroEre_CAF1 72066 115 + 1 CUUUUGGCUUCGUUAGGCUAACAAGCUGCAGCUGCAGCCCGAAAACACUUGGCGAACAAGCCCUGAAAUUUAGAAACUUCUUUCAAUUUACCAACGCACUUAAGCAGUUUCUUUA .....((((((((((((.......(((((....))))).........))))))))...)))).........(((((((.(((...................))).)))))))... ( -26.00) >DroYak_CAF1 72965 115 + 1 CUCUUGGCUUCGUUACGCUAACAAGCUGCAGCUGCAGCCCCAAAACACUUGGCGAACAAGUCCUGAAAUUUAGAAACUUCUUUCAAUUUACCAACGCACUCAAGGAGUUUCUAUA .((..(((((.(((.((((((...(((((....)))))..........))))))))))))))..))....((((((((((((...................)))))))))))).. ( -30.73) >consensus CUUUUGGCUUCGUUACGCUAACAAGCUGCAGCUGCAGCCCGAAAACACUUGGCGAACAAGUCCUGAAAUUUAGAAACUUCUUUCAAUUUACCAACGCACUUAAGGAGUUUCUACA .((..(((((.(((.((((((...(((((....)))))..........))))))))))))))..))....((((((((((((...................)))))))))))).. (-26.31 = -26.67 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:56 2006