Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,949,438 – 10,949,550 |
Length | 112 |
Max. P | 0.996137 |
Location | 10,949,438 – 10,949,550 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 82.55 |
Mean single sequence MFE | -30.56 |
Consensus MFE | -22.27 |
Energy contribution | -23.15 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -3.18 |
Structure conservation index | 0.73 |
SVM decision value | 2.66 |
SVM RNA-class probability | 0.996137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10949438 112 - 20766785 GUGGUGUACUUCAUUACACCCAUAACACCAACUGCUCCAUAAGGUACUUCAGGCCGAAA------GGAAGUGAAAUGGGAGUAAUAGCAGUGAUGGAAGUACUUCGUUAGGGGGAAAU ..((.((((((((((((.(((((..(((...(((..((....)).....))).((....------))..)))..))))).)))))..((....))))))))).))............. ( -31.30) >DroSec_CAF1 61894 98 - 1 AUGGUGUAAUGAAGUGC--------------CUGCUCCAUAAGGUACUUCAGGCCGAAA------GGAAGUGAAAUGGGAGUAAUAGCAGUGAUGGAAGUACUUCGUUAGGGGAAAAU ....(.(((((((((((--------------.((((((......(((((....((....------))))))).....))))))....((....))...))))))))))).)....... ( -29.10) >DroSim_CAF1 64176 98 - 1 GUGGUGUAAUGAAGUGC--------------CUGCUCCAUAAGGUACUUCAGGCCGAAA------GGAAGUGAAAUGGGAGUAAUAGCAGUGAUGGAAGUACUUCGUUAGGGGAAAAU ....(.(((((((((((--------------.((((((......(((((....((....------))))))).....))))))....((....))...))))))))))).)....... ( -29.10) >DroEre_CAF1 63902 98 - 1 AUUGUGUAAUGAAGUGC--------------CUGCUCCAUAAGGUACUUCGAACCGAAA------GGAAGUGAAAUGGUAGUACCAGCAGUGAUGAAAGUACUUCGUUAGGGGAAAAU .((.(.(((((((((((--------------(((((......(((((((((..((....------))...)))......)))))))))))........))))))))))).).)).... ( -29.40) >DroYak_CAF1 64802 104 - 1 GCUGUGUAAUGAAGUGC--------------CAGCUCCAUGGGGCACUUCGAUCCGAAGGGGAGGGGAAGUGAAAUGGGAGUAAUAGCAGUGAUGAAAGUACUUCGUUAGGACAAAAU ..(((.(((((((((((--------------..(((((......((((((..(((.....)))...)))))).....))))).....((....))...))))))))))).).)).... ( -33.90) >consensus GUGGUGUAAUGAAGUGC______________CUGCUCCAUAAGGUACUUCAGGCCGAAA______GGAAGUGAAAUGGGAGUAAUAGCAGUGAUGGAAGUACUUCGUUAGGGGAAAAU ....(.(((((((((((...............((((((......((((((................)))))).....))))))....((....))...))))))))))).)....... (-22.27 = -23.15 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:52 2006