Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,945,195 – 10,945,287 |
Length | 92 |
Max. P | 0.508456 |
Location | 10,945,195 – 10,945,287 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 78.75 |
Mean single sequence MFE | -33.87 |
Consensus MFE | -17.99 |
Energy contribution | -19.80 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.19 |
Mean z-score | -1.78 |
Structure conservation index | 0.53 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10945195 92 + 20766785 UUACUGGAGGCCAAGUGGGAGUGCC--UUCGGGGUCGUU-UGGCUGAAACUG-AUGGACACUUGGACAGACAGAUUU-UUGG---------CCGCUUGGCGCUCUG .....((((((((((((((((((((--.((((..(((..-....)))..)))-).)).)))))...((((......)-))).---------))))))))).)))). ( -38.80) >DroSec_CAF1 57820 92 + 1 UUACUGGGGGCCAAGUGGGAGUGCC--UUUGGGGUCGUU-UGGCUGAAACUG-AUGGACACUUGGACAGACAGAUUU-UUAG---------CCGCUUGGCGCUCUG .....(((.((((((((((((((((--.(..(..(((..-....)))..)..-).)).)))))(......)......-....---------))))))))).))).. ( -34.50) >DroSim_CAF1 59916 94 + 1 UUACUGGGGGCCAAGUGGGAGUGCC--UUUGGGGUCGUUUUGGUUGAAACUGGAUGGACACUUGGACAGACAGAUUU-UUAG---------CCGCUUGGCGCUCUG .....(((.((((((((((((((((--((..(..(((.......)))..)..)).)).)))))(......)......-....---------))))))))).))).. ( -35.50) >DroEre_CAF1 59516 94 + 1 CUACUGGGGGCCAAGUGGGAGUACCGCAUUGGGGUCGUU-CGGCUGAAUCUG-AUGGACACUUGAACAGACAGAUUU-UUGG---------CCGCUUGGCGCUCUG .....(((.(((((((.(((..(((.(...).)))..))-)(((((((((((-.((..(....)..))..)))))))-..))---------))))))))).))).. ( -34.20) >DroYak_CAF1 60263 93 + 1 UAUGUGGGGGCCAAGUGGGAGUGCC--UUUGGGGUCGUU-AUGCUGAAGCUG-AUGGACACUUGGACAGACAGAUUUUUUGG---------CCGCUUGGCGCUCUG .....(((.((((((((((((((((--.(..(..(((..-....)))..)..-).)).)))))...((((.......)))).---------))))))))).))).. ( -34.30) >DroAna_CAF1 57386 92 + 1 ----------AAAAGUGGAUGUAUC--UUUAGGGUCGUUUCGGCUGCAACAG-ACAGACAGUUGGACUGGCAGUAGA-CUGGCAGUAGAUUCUGUUCGGCGCUCUG ----------......(((.((..(--..(((((((...((((((((.....-...).)))))))((((.(((....-))).)))).)))))))...)..))))). ( -25.90) >consensus UUACUGGGGGCCAAGUGGGAGUGCC__UUUGGGGUCGUU_UGGCUGAAACUG_AUGGACACUUGGACAGACAGAUUU_UUGG_________CCGCUUGGCGCUCUG .....(((.((((((((((((((((....(((..(((.......)))..)))...)).)))))(......)....................))))))))).))).. (-17.99 = -19.80 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:51 2006