| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,125,476 – 2,125,580 |
| Length | 104 |
| Max. P | 0.962358 |
| Location | 2,125,476 – 2,125,580 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.66 |
| Mean single sequence MFE | -28.93 |
| Consensus MFE | -15.64 |
| Energy contribution | -16.82 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2125476 104 - 20766785 AAUUAUUCUUGGAUGUUUAUUUCCCGGCUGUGUUAGAGAAUGUCCGUCGCAAGCGCUGUUACCUCUAACAGCGCGGCUAACAGCUGAUAAAUUUCCCAAAACAA-- ..........(((.((((((....(((((((..(((....(((.....))).(((((((((....)))))))))..)))))))))))))))).)))........-- ( -29.90) >DroSec_CAF1 104146 104 - 1 AAUUAUUCUUGGAUGUUUAUUUCCCGGCAGUGUUAGAGAAUGUGCGUCGCAAGCGCUGUUACCUCUAACAGCGCGGCUAACAGCUGAUAAAUUUCCCAAAACAA-- ..........(((.((((((....((((..((((((....((((...)))).(((((((((....)))))))))..)))))))))))))))).)))........-- ( -30.40) >DroSim_CAF1 108100 104 - 1 AAUUAUUCUUGGAUGUUUAUUUCCCGGCAGUGUUAGAGAAUGUGCGUCGCAAGCGCUGUUACCUCUAACAGCGCGGCUAACAGCUGACAAAUUUCCCAAAACAA-- ........((((......((((..((((..((((((....((((...)))).(((((((((....)))))))))..))))))))))..))))...)))).....-- ( -28.00) >DroEre_CAF1 102878 102 - 1 AUUAAUUCUUGGAUGUUUAUUUUCGAGCAGUGUUAGAGAAUGUACA--GCGAACGCUGUAAGCUCUAACAGCGCGGCUAACAGCUGAUAAAUUUCCCAAAACAA-- ..........(((.(((((((.....((..((((((((....((((--((....))))))..))))))))..))(((.....)))))))))).)))........-- ( -31.70) >DroYak_CAF1 105181 102 - 1 AUUAGUUCGUGGAUGUUUAUUUCCCAGCAGUGUUAGAGAAUGUGCA--GCGAAUGCUGUAAGCUCUAACAGAGCGGCUAACAGCUGAUAAAUUUCCCAAAACAA-- ....(((...(((.(((((((.....((..((((((((....((((--((....))))))..))))))))..))(((.....)))))))))).)))...)))..-- ( -32.70) >DroAna_CAF1 108767 90 - 1 AGUACAU-AUGUACAUAUAUAUC-----GAUACUUGAGG---GG-C--CCGA---CUGUUAAG-UUAACAGAGCCGUCGGCAGCUGGGAAUUUUACCUCUACAAAG .((((..-..)))).........-----.....((((((---((-(--(((.---((((((..-.)))))).(((...)))...)))).......))))).))).. ( -20.91) >consensus AAUAAUUCUUGGAUGUUUAUUUCCCGGCAGUGUUAGAGAAUGUGCG__GCAAGCGCUGUUACCUCUAACAGCGCGGCUAACAGCUGAUAAAUUUCCCAAAACAA__ ..........(((.((((((....((((..((((((....(((.....)))..((((((((....))))))))...)))))))))))))))).))).......... (-15.64 = -16.82 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:22 2006