Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,944,159 – 10,944,260 |
Length | 101 |
Max. P | 0.774100 |
Location | 10,944,159 – 10,944,260 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.43 |
Mean single sequence MFE | -31.84 |
Consensus MFE | -20.89 |
Energy contribution | -20.92 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.13 |
Mean z-score | -2.45 |
Structure conservation index | 0.66 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10944159 101 + 20766785 AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGUUCUAUAGGUCCAUGGGUCUAUGGCUCUAUGGGUCUAUGGGUCUUUGUAUUUGGAAG ....(((((((((((((((((((....)))))).))))..)))).(((((((..((((((((.....)).))))))..))))))).....)))))...... ( -36.50) >DroSec_CAF1 56805 93 + 1 AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGUUCUAUAGGUCCAUGGGUCUAUGG--------CUCUAUGGGUCUUUGUAUUUGGAAG ....(((((((((((((((((((....)))))).))))..))))......((..((((((((.....)--------).))))))..))..)))))...... ( -29.00) >DroSim_CAF1 58878 101 + 1 AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGUUCUAUAGGUCCAUGGGUCUAUGGGUCUAUGGGUCUAUGGGUCUUUGUAUUUGGAAG ....(((((((((((((((((((....)))))).))))..)))).(((((((..((((((..(....)..))))))..))))))).....)))))...... ( -38.70) >DroEre_CAF1 58445 85 + 1 AAUUGAUGCCCGCGCGCUGAAUAGGAAUAUUUAUACGCAUGCGGGUCUAUACGUCCAUAGGUCCA----------------CGGGUCUUUGUGUUUGGAAG ........((((((.((((((((....))))))...)).))))))((((.(((..((.((..(..----------------..)..)).))))).)))).. ( -23.20) >DroYak_CAF1 59147 101 + 1 AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGCUCUAUAGGUCCAUGGGUCUAUGUGGCUAUGAGGCUAUGGAUCUUUGUGCUUGGAAG ....((.(((((.((((((((((....)))))).)))).)).)))))..((((..((.((((((..((((((....)))))))))))).))..)))).... ( -31.80) >consensus AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGUUCUAUAGGUCCAUGGGUCUAUGG__CUAUG_GUCUAUGGGUCUUUGUAUUUGGAAG .........((((((((((((((....)))))).))))..)))).((((...((.((.((..((((((..........))))))..)).)).)).)))).. (-20.89 = -20.92 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:50 2006