Locus 3197

Sequence ID 2R_DroMel_CAF1
Location 10,934,969 – 10,935,059
Length 90
Max. P 0.654741
window5256

overview

Window 6

Location 10,934,969 – 10,935,059
Length 90
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 75.99
Mean single sequence MFE -24.67
Consensus MFE -9.47
Energy contribution -10.97
Covariance contribution 1.50
Combinations/Pair 1.16
Mean z-score -2.21
Structure conservation index 0.38
SVM decision value 0.25
SVM RNA-class probability 0.654741
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10934969 90 - 20766785
CGCGAUUAUAGCGUC-AC---GGCAACAGGUUGUCAAAUGUGUUGAAACUGAAA------AGUUUCUGACACUGUUGUAG----GCAACUUUAAUUUAAUCAAU
...(((((..((...-..---.))...((((((((.((((((((((((((....------)))))).))))).)))...)----))))))).....)))))... ( -25.50)
>DroSec_CAF1 47727 90 - 1
CGCGAUUAUAGCGUC-AC---GGCAACAGGUUGUCAAAUGUGUUGAAACUGAAA------AGUUUCUGACGCUGUUGUAG----GCAACUUUAAUUUAAUCAAU
...(((((.((((((-(.---(((((....))))).........((((((....------)))))))))))))((((...----.)))).......)))))... ( -28.80)
>DroSim_CAF1 49735 90 - 1
CGCGAUUAUAGCGUC-AC---GGCAACAGGUUGUCAAAUGUGUUGAAACUGAAA------AGUUUCUGACGCUGUUGUAG----GCAACUUUAAUUUAAUCAAU
...(((((.((((((-(.---(((((....))))).........((((((....------)))))))))))))((((...----.)))).......)))))... ( -28.80)
>DroEre_CAF1 47919 90 - 1
CGCGAUUAUAGCGUC-UG---UGCAACAGGUUGUCAAACGUGUUGAAACUGAAA------AGUUUCUGUUGCUGUGCUAG----GCAACUUUAAUUUAAUCAAU
...(((((..((((.-((---.((((....)))))).))))...((((((....------)))))).((((((......)----))))).......)))))... ( -24.40)
>DroYak_CAF1 49655 97 - 1
CGCGAUUAUAGCGUUGUC---GGCAACAGGUUGUCAAACGGGUUGAAACUGAAAGGCACAAGUUUCUGAUGCUGUCCAAG----GCAACUUUAAUUUAAUCAAU
...((((((((.((((((---(((((....)))))..(((((((((((((..........)))))).))).))))....)----))))).)))...)))))... ( -22.70)
>DroPer_CAF1 46145 86 - 1
CAUGAUU----CGUC-CCUUGGCCAACAGGCUGUCGGGGAA------AUUUGG-------AAUUUCUGAUCAAAAAUGAGAAUCUUAACUACGCUUUAAUCAAU
...((((----(.((-((((((((....)))))..))))).------..(..(-------.....)..)..........))))).................... ( -17.80)
>consensus
CGCGAUUAUAGCGUC_AC___GGCAACAGGUUGUCAAAUGUGUUGAAACUGAAA______AGUUUCUGACGCUGUUGUAG____GCAACUUUAAUUUAAUCAAU
.......((((((((......(((((....))))).........((((((..........)))))).))))))))............................. ( -9.47 = -10.97 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:45 2006