Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,931,828 – 10,931,947 |
Length | 119 |
Max. P | 0.953414 |
Location | 10,931,828 – 10,931,947 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.58 |
Mean single sequence MFE | -25.89 |
Consensus MFE | -13.20 |
Energy contribution | -15.34 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.24 |
Mean z-score | -2.12 |
Structure conservation index | 0.51 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10931828 119 + 20766785 UUUCAAGUAGUUUGAUGGUAUUCAAUUUGAGUUGGAAAUCUCUUCAUAAAAUCAUAUCUGAACUUUCCAAGCAAAUGGAACUCCAUCAAGACUAGUGAAUGUGAAAAAUCUGGAAC-UCC .((((..(((((((((((..(((.(((((..(((((((..((...(((......)))..))..))))))).))))).)))..))))).)))))).)))).................-... ( -28.40) >DroSec_CAF1 44644 119 + 1 UUUCAAGUAGUCUGAUGGGAUUCAAUUUGAGUUGGGAAUCUCUUCACCAUAUCAUUUCUGAACUUUCCAAGCAAAUAGAAUUCCAUCAAGAUUUGGGAAUGUGAAAAAUCUGGAAC-UCC (..(((((....(((((((((((.(((((..(((((((..((.................))..))))))).))))).)))))))))))..)))))..)..................-... ( -31.03) >DroSim_CAF1 46595 119 + 1 UUUCAAGUAGUCUGAUGGGAUUCAAUUUGAGUUGGAAAUCUCUUCAUCAUAUCAUCUCUGAACUUUCCAAGCAAAUAAAAUUCCAUCAAGAUUUGGGAAUGUGAAAAAUCUGGAAC-UCC (..(((((....((((((((((..(((((..(((((((..((.................))..))))))).)))))..))))))))))..)))))..)..................-... ( -27.93) >DroEre_CAF1 44645 119 + 1 UUUUAAGGAAUCUGAUGGGAUUCAAUUUGAGUUGGGAACCUCUGCACAAUAUCAUCUCUCAACUUUCCAAGCAAAUGGAAUUCCAUCAAGAUUUGUGAAUGUGAAAAUUCUGGCAC-UCC .......((((((((((((((((.(((((((((((((...................)))))))).......))))).)))))))))).))))))(((...((....)).....)))-... ( -30.22) >DroYak_CAF1 46319 119 + 1 UUCCUAGCAAUCUGAUGGCAUUCAAUUUGAGUUGGAAACCCAUGCACCAUAUCAUCUCUCAACUUUCCAAGCAAAUGGAAUUCCAUCAAGAUUUGUGAAUGUGACAAUUCUGGCAC-UUC ......((....((((((.((((.(((((..(((((((.........................))))))).))))).)))).))))))(((.((((.......)))).))).))..-... ( -26.41) >DroAna_CAF1 43455 95 + 1 UUUCAACUAAUUUUAAAUCCUUAAAUCUUAA---------------AAAAAA-----C-UAAAUUUAUAAGCAAUUUGCA----GUUGAAAUUGGUGAAAGAGAAACACAAAACAUGCCC (((((.((((((((((..........((((.---------------(((...-----.-....))).)))).........----.))))))))))))))).................... ( -11.35) >consensus UUUCAAGUAAUCUGAUGGGAUUCAAUUUGAGUUGGAAAUCUCUUCACAAUAUCAUCUCUGAACUUUCCAAGCAAAUGGAAUUCCAUCAAGAUUUGUGAAUGUGAAAAAUCUGGAAC_UCC .(((....((((((((((.((((.(((((..(((((((.........................))))))).))))).)))).)))))).))))...)))..................... (-13.20 = -15.34 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:42 2006