Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,929,669 – 10,929,768 |
Length | 99 |
Max. P | 0.515848 |
Location | 10,929,669 – 10,929,768 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 75.56 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -13.30 |
Energy contribution | -15.56 |
Covariance contribution | 2.26 |
Combinations/Pair | 1.23 |
Mean z-score | -1.84 |
Structure conservation index | 0.46 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.515848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10929669 99 + 20766785 CGUGCAAACCUGG----CCAGAAAUUUGCCCCCGGUCAAACUUUGUUUACCAACUUAGAG----------AGAAGGAGUGCCAAAAGUUUGACCCGAAUUCUGGCCCUCGAGU ...........((----((((((.((((.....(((((((((((...(((...(((....----------..)))..)))...)))))))))))))))))))))))....... ( -31.00) >DroSec_CAF1 42482 99 + 1 CGUGCAAACCUGG----CCAGAAAUUUGCCCACGGUCAAACUUUGUUUACCAACUUAGAG----------AGAAGGAGUGGCCAAAGUUUGACCCAAAUUCUGGCCCUCGAGU ...........((----((((((.((((.....((((((((((((..(((...(((....----------..)))..)))..))))))))))))))))))))))))....... ( -35.20) >DroSim_CAF1 44432 99 + 1 CGUGCAAACCUGG----CGAGAAAUUUGCCCACGGUCAAACUUUGUUUACCAACUUAGAG----------AGAAGGAGUGGCCAAAGUUUGACCCAAAUUCUGGCCCUCGAGU ...........((----(.((((.((((.....((((((((((((..(((...(((....----------..)))..)))..)))))))))))))))))))).)))....... ( -30.80) >DroEre_CAF1 42463 99 + 1 CGUGUAAACCUGG----CCAGAAAUUUGCCCCCGGUCAAACUUUGUUUACCAACUUAGAG----------AGCAGGAGAGCCCCAAGUUUGACCCAAAUCCUGGCCCUCGAGU ...........((----((((..(((((.....((((((((((.((((.((..(((...)----------))..)).))))...))))))))))))))).))))))....... ( -29.20) >DroYak_CAF1 44113 109 + 1 CAUGCAAACCUGG----CCAGAAAUUUGCCCCCGGUCAAACUUUGUUUACCAACUUAGAGCAGAAGAAGUAGAGGGAGAGCCCAAAGUUUGACCCAAAUCAUGGCCCUCGAGU ...........((----(((...(((((.....(((((((((((.(((((...(((.......)))..)))))(((....)))))))))))))))))))..)))))....... ( -30.60) >DroPer_CAF1 41068 87 + 1 CAUGCAAAAUUAACAGAAGAGAAAACGAGGAAAAGCCAAACUUUGUUGUGU---------------------AGC--CAGCUAGAAGUUUGACCCUAGUCCUGGGGC---AGA ..(((........(......)....(.((((..((.((((((((((((...---------------------...--))))..))))))))...))..)))).).))---).. ( -17.30) >consensus CGUGCAAACCUGG____CCAGAAAUUUGCCCACGGUCAAACUUUGUUUACCAACUUAGAG__________AGAAGGAGAGCCCAAAGUUUGACCCAAAUCCUGGCCCUCGAGU ...(((((.(((......)))...)))))....((((((((((((..(((...(((................)))..)))..))))))))))))................... (-13.30 = -15.56 + 2.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:41 2006