Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,927,137 – 10,927,249 |
Length | 112 |
Max. P | 0.729485 |
Location | 10,927,137 – 10,927,249 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.49 |
Mean single sequence MFE | -29.11 |
Consensus MFE | -22.38 |
Energy contribution | -22.14 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.77 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10927137 112 + 20766785 UUUAAUUA-GAAAAAUAAAAUGAAAGC-------GAAGAGCGUUUUGCAAGCCCCACGGCUUGAGGUGGAAUUCAAAAGCAGGGUCAAAGGCACCCAAGCAAGUUGCCUUGAUCUUAGCA ........-(((..........(((((-------(.....)))))).((((((....))))))........)))....((((((((((.((((.(.......).)))))))))))).)). ( -28.90) >DroSec_CAF1 40004 112 + 1 CUUAAUUA-GAAAAAUAAAAUGAAAGC-------GAAGAGCGUUUUGCAAGCCCCACGGCUUGAGGUGGAAUUCAAAGGCAGGGUCAAAGGCACCCAAGCAAGUUGCCUUGAUCUUAGCA ........-(((..........(((((-------(.....)))))).((((((....))))))........)))....((((((((((.((((.(.......).)))))))))))).)). ( -28.70) >DroSim_CAF1 41924 112 + 1 UUUAAUUA-GAAAAAUAAAAUGAAAGC-------GAAGAGCGUUUUGCCAGCCCCACGGCUUGAGGUGGAAUUCAAAGGCAGGGUCAAAGGCACCCAAGCAAGUUGCCUUGAUCUUAGCA ........-...........((((.((-------.....)).(((..((((((....))))...))..)))))))...((((((((((.((((.(.......).)))))))))))).)). ( -29.50) >DroEre_CAF1 39852 113 + 1 UUUAAUUAAGAAAAAUAAAAUAAAAGC-------GAAGAGCGUUUUUCAAGCCCCACAACUUGAGGUGGAAUUCAAAAGCAGGGUCAAAGGCACCCAAGCAAGCUGCCUUGAUCUUAGCA .........(((.........((((((-------(.....)))))))......((((........))))..)))....((((((((((.((((.(.......).)))))))))))).)). ( -25.40) >DroYak_CAF1 41425 119 + 1 UUUAAUUA-GAAAAAUGAAAUAAAAGCAAGCAGCGCAGAGCGUUUUUCAAGCCCCACAACUUGAGGUGGAAUUCAAAAGCAGGGUCAAAGGCAGCCACGAUAGUUGCCUUGAUCUUAGCA ........-((((((((........((.....))......)))))))).....((((........)))).........((((((((((.((((((.......)))))))))))))).)). ( -33.04) >consensus UUUAAUUA_GAAAAAUAAAAUGAAAGC_______GAAGAGCGUUUUGCAAGCCCCACGGCUUGAGGUGGAAUUCAAAAGCAGGGUCAAAGGCACCCAAGCAAGUUGCCUUGAUCUUAGCA .......................................(((((((.......((((........))))......)))))((((((((.((((.(.......).)))))))))))).)). (-22.38 = -22.14 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:40 2006